Gene detail information of Glyur000044s00005147 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G11240.1 | 2.00E-09 | |
| NR | XP_004504981.1 | 1.24E-81 | PREDICTED: ribosomal RNA-processing protein 17-like isoform X1 [Cicer arietinum] |
| trEMBL | tr|G7JRS5|G7JRS5_MEDTR | 3.00E-80 | Uncharacterized protein {ECO:0000313|EMBL:AFK47641.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00044 | 101706 | 103375 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000044s00005147.1 | PF09805.4 | Nop25 | 18 | 139 | 3.00E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 31.225 |
| SRR1783600 | control | 31.538 |
| SRR1783602 | moderate drought stress | 39.718 |
| SRR1811619 | moderate drought stress | 40.168 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 58.368 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 58.381 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 44.020 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 43.243 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 52.221 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 51.993 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 23.053 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.839 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 42.588 |
| SRR2868004 | Drought Stress (root) | 40.017 |
| SRR2967015 | Control (root) | 36.088 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 27.900 |
| SRR9715740 | Leaf | 44.388 |
| SRR9715741 | Leaf | 35.337 |
| SRR9715739 | Root | 5.897 |
| SRR9715742 | Root | 24.247 |
| SRR9715743 | Root | 19.134 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 135.961 |
| SRR8749028 | MeJA induced 9h | 65.965 |
| SRR8749029 | MeJA induced 9h | 122.160 |
| SRR8749030 | Uninduced | 69.583 |
| SRR8749031 | Uninduced | 89.817 |
| SRR8749032 | Uninduced | 89.476 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 42.378 |
| SRR8400027 | Control - Root | 40.229 |