Gene detail

Gene detail information of Glyur000044s00005139

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G06350.1	0	dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative
NR	AFK48985.1	0	unknown [Medicago truncatula]
COG	NP_867287.1	2.00E-92	3-dehydroquinate dehydratase / shikimate 5-dehydrogenase precursor [Rhodopirellula baltica SH 1]
Swissprot	tr\|Q9SQT8\|DHQSD_ARATH	0	Shikimate dehydrogenase (Precursor)
trEMBL	tr\|I3T8Z3\|I3T8Z3_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK48985.1}

Sequence

Transcript Sequence

>Glyur000044s00005139.1
CCCCAACCCAATCTCCATCCCCATCATCACAACACAAGGTAGAACAACCAATTATCCAATACCAACCAAAGCCATTCAACGCTGGTCCACTCCCAACTACTCCCTCCATTTTCCCTTTTGAAGGCACCAACAACCCAGTCACTGGTCAATTCATTTCATGGACTCATCACCCAACCTCTCGGTAAGCAAGCGCCACTGCACCCAACTCATNTTCTGTTCCACTCTCCTCTTCTCTTTCTGTTCAATTCAATTCTCAGTTCTCAATCCTTAATCCTTATTCCTTCTCCGATTGATTTGTCTCTCTTTCTCTAGTTCGCATCGCCGTCAANGGCAAGTGAAGGAATGAGGAGGAGCGGCACCTTAATCTGCGCTCCCATCATGGGCGAAACCATCGAAAATATGAAGGTCGATATTCATACGGCTAAACTCGGTGGCGCCGACGTTGTCGAAATACGATTGGACTCTCTCAACACCTTCAACCCCTCTCAGGATCTCAACGCCCTCATTCACGACCGTCCTTTGCCCATNTTGTTCACTTACAGGCCTAAATGGGAGGGTGGTATGTATGATGGTGATGAAAACCAACGGTTGGATGCGCTACGATTGGCCATGGAGTTGGGAGCTGATTACATTGACGTTGAACTTCAGGTTGCTGACCAATTCTACGACTCCATACGTGGGAAGGAATTCAATAAAACCAAGGTCATTGTTTCGTCTCACAACTATCAGCATACTCCGTCAGTCGAGGATCTTGGCAACCTTGTAGCAAGAATACAGGCAACTGGGGCAGACATTGTAAAGATTGCGACAACTGCCACGGAGATCACTGATGTGGCACGCATGTTTCAAATAATGGTGCATTCTCAAGTAAGACACCTAAGTTGTGGAAGAGAGGTCAAAATTGTTATCAAGGGGCATATATCTGAAGATATTGGGACTGATGGAATTGAAGCAAATGTTCCATTTATCGGACTTGTTATGGGTGATAGGGGATTGATTTCGCGTATACTTTGTGCAAAATTTGGTGGGTATCTCACTTTTGGTACCCTNGAGTCAGGAGTAGTTTCAGCTCCTGGTCAACCTACACTCAAGGATCTATTGCATCTATACAATTTGAGACAAATGGGACCTGACACAAAAGTATATGGGATTATTGGAAAGCCTGTCGGTCACAGTAAATCACCCATTTTGTTCAATGAAGCCTTCAAGACAGTTGGTGTTGATGGAGTTTTTGTATATTTATTGGTGNATGACCTTGCCAATTTTCTCAGGACTTACTCATCAACAGATTTTGCGGGATTCAGTGTTACCATTCCTCACAAGGAGACAGCACTTAAGTGTTGTGATGAAGTTGATCCAGTGGCTAAGTCAATAGGAGCTGTAAATTGCATTATAAGAAGACCAACNGATGGGAAGTTGATTGGGTATAACACCGATTATGTTGGTGCTATTTCTGCAATTGAGGATGGGCTACGAGATAAACATATTGGCAGTGGCACAGCTGTTTCTCCATTAGCGGGTAAGCTGTTTGTTGTTATTGGGGCTGGTGGTGCTGGGAAGGCACTTGCTTACGGTGCAAAAGAGAAAGGAGCAAGGGTTGTGATTGNGAACCGCACCTATGATCGTGCCAGAGAACTTGCTGATGTAATTGGAGGAGATGCTTTAGCCCTTGGTGATTTAGATAATTACCATCCGGAGGATGGTATGGTTCTTGCAAACACAACATCAATTGGAATGCAACCAAAAGTTGATGAAACACCTATTTCTAAGCATGCATTGAAATTTTACTCCCTGGTTTTTGATGCTGTCTACACGCCCAAAATGACTAGACTCTTGAAGGAAGCCGAAGAATCGGGAGCCACTATTGTAACAGGATTGGAGATGTTTATTGGACAAGCACATAAACAGTACGAGAACTTTACTGGACTGCCAGGTAAGCTGAATTTAAAAAAAATTAATAGACCATGTTCCATTGCCCCTATTTCAGTGCACCAAAGCAACTCTTCAAAAAAATTATGGAGAACTATTGATGAATGATGAGTTTGTTTTATGCTCAACTAGTGAAGCACAGTAGCAACAAGTCAGTAACTAAGNGCATTTTTCAATCCTAGAAGCCGGATGGTGAGCAGCATTGCTTGCTTTTATTGTTTTAACATTCAAGGTTTTGAAAGCAGGTGGCATCTGTTTAAATTGCCTTTGCATGTTGAGGGGGCTTTCTTTAGAGCTTGGTGATTTGTTGCATTTATCCTNCCCGTTCTACATTTCCAATTTCTCCTGGAGCAAGTTTTATTCATCGCCGCCAGGAAGACTTCTTGGCAATCACAATTAATATTAGCAATTGANTTTTGTCTCTCAATTCCTTGGAAGTTTTTTGCTTTGTAAATTGTATCTAACTTTTTAAAGCTGAAGATGCATCGTTTTCCTATTAATTTTATGAGGATAAGTTTAAAACGAAATAACTAGCATGGTANTTGCGTGGATGAGTATTCTTATGTGCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00044	63098	70013	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13832	aroDE, DHQ-SDH	EC:4.2.1.10 1.1.1.25	Biosynthesis of amino acids	map01230
			Biosynthesis of amino acids	map01230
			Phenylalanine, tyrosine and tryptophan biosynthesis	map00400
			Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

biological_process

GO:0019632 shikimate metabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0003855 3-dehydroquinate dehydratase activity

GO:0004764 shikimate 3-dehydrogenase (NADP+) activity

GO:0050661 NADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000044s00005139.1	PF01487.10	DHquinase_I	9	175	9.40E-55
Glyur000044s00005139.1	PF01487.10	DHquinase_I	204	257	2.20E-13
Glyur000044s00005139.1	PF08501.6	Shikimate_dh_N	270	350	1.70E-24
Glyur000044s00005139.1	PF01488.15	Shikimate_DH	388	478	3.80E-13
Glyur000044s00005139.2	PF01487.10	DHquinase_I	9	175	7.80E-55
Glyur000044s00005139.2	PF01487.10	DHquinase_I	201	254	2.20E-13
Glyur000044s00005139.2	PF08501.6	Shikimate_dh_N	267	347	1.70E-24
Glyur000044s00005139.2	PF01488.15	Shikimate_DH	385	475	3.70E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.902
SRR1783600	control	15.827
SRR1783602	moderate drought stress	14.624
SRR1811619	moderate drought stress	14.518

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.677
DRR006520	Root Summer glycyrrhizin high producing strain	13.726
DRR006521	Root Winter glycyrrhizin high producing strain	4.984
DRR006522	Root Winter glycyrrhizin high producing strain	4.782
DRR006523	Root Summer glycyrrhizin low producing strain	18.619
DRR006524	Root Summer glycyrrhizin low producing strain	18.718
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.116
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.793

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	52.775
SRR2868004	Drought Stress (root)	52.512
SRR2967015	Control (root)	51.692

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	37.853
SRR9715740	Leaf	32.147
SRR9715741	Leaf	48.837
SRR9715739	Root	14.016
SRR9715742	Root	24.808
SRR9715743	Root	21.456

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	39.303
SRR8749028	MeJA induced 9h	36.121
SRR8749029	MeJA induced 9h	28.777
SRR8749030	Uninduced	43.276
SRR8749031	Uninduced	51.806
SRR8749032	Uninduced	27.881

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	46.289
SRR8400027	Control - Root	35.767