Gene detail

Gene detail information of Glyur000044s00005138

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G21585.1	4.00E-121	endonuclease 4
NR	XP_004504986.1	0	PREDICTED: endonuclease 4-like isoform X1 [Cicer arietinum]
Swissprot	tr\|F4JJL0\|ENDO4_ARATH	5.00E-153	Endonuclease 4 (Precursor)
trEMBL	tr\|I3SW41\|I3SW41_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK44483.1}

Sequence

Transcript Sequence

>Glyur000044s00005138.1
GTACGAAAAGACAATTTTTCAATAGAAGGACGCAAACTCACCTCCTCAGCTTANGAGGGAATACAATTACACATGCGATGATGTCGTCTATCTGTGTCTGTACTCAGTAACTGTATGATACACATGTGGGAATGAGTATTGGTATGGATGTCCCCAAGCTACCGTGTGATGAGAGAGTGAGAGCGCTCTTTCTTCTGTTGCTGCTGATGCCACTTTCAACTGTTCTGGGTTGGGGAAAGGAAGGCCACTATGCTATTTGTAAGATCACACAGGAGTATCTTAGTGAAGAAGCCCTATTTGCAGTGAAACAACTGCTTCCAGACTCTGCTGAAGGTGATCTTGCTGCAGTTTGCTCTTGGGCTGATGAGGTTCGGCATAATTACAATTATCGTTGGAGTAGTGCTCTACATTATGTTGACACGCCGGATTTCAAGTGTAACTATGAATACTGCAGAGACTGTCATGATTCTTCCGGACATAAACATAGATGTGTTACTGGAGCAATACACAATTATACAATGCAACTCAAATCAGCTGAGGCAGACACTTCGTCTGAATTAAACTATAATTTGACAGAGGCACTTATGTTCTTGTCACATTTTGTTGGGGATGTACATCAGCCCCTACATGTAGGTTTTACTGGAGACCTAGGTGGAAACACTATAACAGTCCGTTGGTACCGGAGGAAAACAAATCTTCATCATGTATGGGATGACATGATTATTGACTCTGCTCTGAAAACATTCTATGGTTCAGATCTTTCAATTATGATACAGGCTATTCAAAGGAATATTACTGATATTTGGTCAAATGATGTTTCTATTTGGGAACATTGTGCACACAACTACACAGCATGTCCAGATCGGTATGCTTCTGAAAGCATTAGCTTAGCATGCAAGTTTGCGTATAAGAATGCTACACCGGGAAGCACTTTGGAAGATGAGTACTTCCTTTCTCGGTTGCCTATTGTGGAGAAAAGGCTGGCTCAAGGTGGTGTGCGACTTGCAGCTATCCTTAACCGCATTTTCACTTCTAAGACCGGAATAGCTCAAGCTTGAAGAGTGAAGACACATCTTCGGGGTANCAGTCCATATTACATTTTTGTTGTCAATTGGGGCTACGCCAAAAGGAGAGAGAGACCTTCACTGCTCTCCGTTTGCCAACTCATCTAAATAGATTGTACTTCATAGCTTGTTTATATATATGCCTATTCTTTTTTTTTTTAATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00044	58784	62586	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006308 DNA catabolic process

molecular_function

GO:0003676 nucleic acid binding

GO:0004519 endonuclease activity

GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000044s00005138.1	PF02265.11	S1-P1_nuclease	34	299	1.40E-83

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.063
SRR1783600	control	24.346
SRR1783602	moderate drought stress	13.396
SRR1811619	moderate drought stress	13.269

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.882
DRR006520	Root Summer glycyrrhizin high producing strain	23.051
DRR006521	Root Winter glycyrrhizin high producing strain	16.757
DRR006522	Root Winter glycyrrhizin high producing strain	16.190
DRR006523	Root Summer glycyrrhizin low producing strain	23.983
DRR006524	Root Summer glycyrrhizin low producing strain	23.614
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.797
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.845

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.063
SRR2868004	Drought Stress (root)	12.659
SRR2967015	Control (root)	13.876

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.696
SRR9715740	Leaf	7.217
SRR9715741	Leaf	3.365
SRR9715739	Root	8.531
SRR9715742	Root	9.888
SRR9715743	Root	8.934

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.866
SRR8749028	MeJA induced 9h	5.136
SRR8749029	MeJA induced 9h	7.695
SRR8749030	Uninduced	4.408
SRR8749031	Uninduced	3.096
SRR8749032	Uninduced	4.145

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.563
SRR8400027	Control - Root	25.583