Gene detail

Gene detail information of Glyur000044s00005134

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G29990.1	0	alternative NAD(P)H dehydrogenase 2
NR	XP_003529302.1	0	PREDICTED: internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial-like isoform X1 [Glycine max]
COG	YP_003291922.1	3.00E-55	FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Rhodothermus marinus DSM 4252]
Swissprot	tr\|O80874\|NDA2_ARATH	0	Internal alternative NAD(P)H-ubiquinone oxidoreductase A2, mitochondrial (Precursor)
trEMBL	tr\|I1KLE3\|I1KLE3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G31050.1}

Sequence

Transcript Sequence

>Glyur000044s00005134.1
ATGGCATTGGCAAGGATTGCTAGGGCCAACCTGAGAAGATCAGGAGGTGCTTATGGAAGTTATGCACGTGAGAGGGATATGTTCAATGAGGGAGTATATACAAGCGAATCCTCCTTACCTTCCCATGTAAATTTCAAAGTAGGTGGAGAATTTTCAAATATTTTCAGAATTAAGGAGCAGAACTACATGAACTTTTCAATGAGGGGAATAGCAGGAACCCCATCCTACCAGCATCCTTCTGCTAGTGCACAGAGGGTTGTGGATGATTCAGAGTTGGAAGATGATCAGCCAAGGTATGCAGGACTAGAGGCAACAAAGCCAGGTGAAAAGCCCAGGGTGGTTGTTCTTGGTACTGGTTGGGCTGCTTGTCGGTTTCTCAAAGGGATAGACACCAGAATCTATGATGTTGTGTGCATATCTCCAAGGAATCATATGGTTTTTACTCCTTTGTTGGCTTCAACATGTGTTGGAACCTTGGAATTCCGGTCTGTTGCTGAGCCTGTTGGTAGAATACAGGAAGCATTATCAAAGGATCCTAACTCCTACTTCTTTCTAGCTTCCTGCACTGGCATTGACACAGGCAAACACGAAGTGTACTGTGAGACNGTTAACAATGGTGGATTGCCTCGAGAGCCTTACCGATTTAAAGTCGCATATGACAAGCTTGTAATTGCAGCTGGGTCTGAGCCTTTAACATTTGGTATCAAAGGAGTAAAGGAACATGCTTTTTTCCTTCGTGAAGTGAATCATGCTCAGGAAATAAGGAAGAGACTTCTCCTTAACCTTATGCTTTCTGAAAATCCAGGCATATCAGAAGAAGAAAAGAAACGCCTTTTACACTGTGTAGTTATTGGAGGTGGCCCTACAGGAGTGGAATTTAGTGGTGAATTGAGTGATTTCATCATGAAAGATGTTCATGAGCGCTATGCTCACGTTAAAGATTACATTCATGTCACACTCATTGAGGCAAATGAGATACTGTCATCCTTTGATGTTAGTCTACGGCAATATGCAACAAAGCACTTGACAAAGTCCGGGGTTCGTCTTATGCGGGGTGTTGTGAAGGAGGTGCATCCCAAAAGGATAGTTCTTAGTGATGGAACTGAAGTTCCTTATGGCCTCTTGGTCTGGTCCACAGGGGTTGGTCCCTCTGAGTTTGTCAAATCACTAAATCTTCCCAAGTCTCACGGTGGAAGAATTGGTGTTGATCAATGGATGCGTGTTCCCGCTGTGGAAGATGTCTTTGCCCTTGGGGATTGTGCTGGTTTTCTTGAACAAACTGGAAAGCCCGTGCTTCCTGCTCTAGCTCAGGTTGCTGAAAGGGAAGGGAAGTACCTTGTGGAGTTGTTCAACAAGATTGGGAAACAGGATGGAGGCAAGGCTTTCTCCGCAAAAGGCATCCCACTTGGAGAGCCTTTTGTGTACAAGCATCTTGGGAGCATGGCATCAGTAGGTGGCTATAAAGCACTTGTTGATCTACGACAGTCAAAGGATGCAAAGGGGTTGTCACTTGCTGGTTTTGTCAGCTGGTTGGTATGGCGTTCTGCATATCTTACACGTGTGTTAAGCTGGAGGAACAGGTTTTACGTGGCAGTGAACTGGGCAACCACTTTTGTCTTCGGCAGAGACAACAGCAGGATAGGTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00044	45614	48469	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000044s00005134.1	PF07992.9	Pyr_redox_2	112	422	2.50E-30
Glyur000044s00005134.1	PF00070.22	Pyr_redox	280	352	1.20E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.320
SRR1783600	control	0.338
SRR1783602	moderate drought stress	0.407
SRR1811619	moderate drought stress	0.523

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.198
DRR006520	Root Summer glycyrrhizin high producing strain	0.259
DRR006521	Root Winter glycyrrhizin high producing strain	0.234
DRR006522	Root Winter glycyrrhizin high producing strain	0.263
DRR006523	Root Summer glycyrrhizin low producing strain	0.163
DRR006524	Root Summer glycyrrhizin low producing strain	0.172
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.387
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.335

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.874
SRR2868004	Drought Stress (root)	20.211
SRR2967015	Control (root)	7.917

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.410
SRR9715740	Leaf	2.124
SRR9715741	Leaf	83.850
SRR9715739	Root	0.793
SRR9715742	Root	2.966
SRR9715743	Root	2.746

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.088
SRR8749028	MeJA induced 9h	0.026
SRR8749029	MeJA induced 9h	0.425
SRR8749030	Uninduced	0.321
SRR8749031	Uninduced	0.797
SRR8749032	Uninduced	0.896

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.466
SRR8400027	Control - Root	9.418