Gene detail information of Glyur000043s00003853 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | AES65140.2 | 1.69E-77 | VQ motif protein [Medicago truncatula] |
| trEMBL | tr|G7INF7|G7INF7_MEDTR | 6.00E-78 | VQ motif protein {ECO:0000313|EMBL:AES65140.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00043 | 493371 | 494138 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000043s00003853.1 | PF05678.9 | VQ | 110 | 137 | 5.30E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 41.091 |
| SRR1783600 | control | 38.914 |
| SRR1783602 | moderate drought stress | 37.083 |
| SRR1811619 | moderate drought stress | 37.174 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.424 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.419 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.073 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.011 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.952 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.823 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.847 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.678 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 26.448 |
| SRR2868004 | Drought Stress (root) | 68.579 |
| SRR2967015 | Control (root) | 64.977 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 36.019 |
| SRR9715740 | Leaf | 31.088 |
| SRR9715741 | Leaf | 66.347 |
| SRR9715739 | Root | 13.250 |
| SRR9715742 | Root | 14.720 |
| SRR9715743 | Root | 11.250 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 31.751 |
| SRR8749028 | MeJA induced 9h | 143.388 |
| SRR8749029 | MeJA induced 9h | 88.620 |
| SRR8749030 | Uninduced | 198.977 |
| SRR8749031 | Uninduced | 177.483 |
| SRR8749032 | Uninduced | 90.488 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 37.921 |
| SRR8400027 | Control - Root | 29.777 |