Gene detail

Gene detail information of Glyur000043s00003834

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G15990.1	0	sulfate transporter 3;4
NR	KEH39568.1	0	sulfate/bicarbonate/oxalate exchanger and transporter sat-1 [Medicago truncatula]
COG	YP_005320855.1	3.00E-90	sulfate transporter [Saprospira grandis str. Lewin]
Swissprot	tr\|Q9LW86\|SUT34_ARATH	0	Probable sulfate transporter 3.4
trEMBL	tr\|A0A072VDQ1\|A0A072VDQ1_MEDTR	0	Sulfate/bicarbonate/oxalate exchanger and transporter sat-1 {ECO:0000313\|EMBL:KEH39568.1}

Sequence

Transcript Sequence

>Glyur000043s00003834.1
CAACGCTGTGTTGTTTCTCAGAGAAAAACCGCTGAAGTTAAAAACAGAGAGAAAACAGAACAGAACAAATTATGGGTGTGAACTGCAACAGAGTAGAGCACTTCGATTGCCATGAAAGGGAAAAAGAAGAAGAAGAAGAAGAAACCAAAACCCAAACCCAAACCGAGATTCCAATGCCACCATCATTGGAAATCCACCAAGTTCGGTTACCACCAGAGAGAAGCACACCCCAGAAACTGAGGCAAAGGNTCTCAGAAATCTTCTTCCCAGATGACCCACTCCACCGTTTCAAAAACCAACCTTGCTTCGCCAAGTTGCTTCTCACCCTCCAATGCCTCTTCCCCATTTTCCAGTGGGGCCCTCAATACAACCTTACCCTTCTCCGCTCTGACCTCATCTCTGGCCTCACCATTGCTAGCCTCGCCATTCCTCAGGGAATCAATTCCAGTTTTGTGCCCCCATTGNTATACTCTCTGCTTGGAAGTTCTAGACATCTTGGTGTTGGACCTGTTTCAATTGCTTCTTTGGTTATGGGATCAATGTTGAGTGAGGCAGTTTCTTACACTAGAGACCCNATTCTCTATCTGCAATTGGCTTTCACCGCCACTTTCATTGCCGGTTTATTCCAAGCTTCTCTGGGTATATTAAGGTTAGGCTTTGTGATTGATTTCCTTTCGAAGGCAACGCTGGTGGGTTTCATGGCGGGTGCTGCTATCATTGTGTCACTACAGCAGCTGAAAGGGTTACTAGGAATAGTGCACTTTACTAACAAGATGCAAATAATCCCTGTACTCATCTCTGTTTACAAGCAAAAGGACGAGTGGTCTTGGCAAACCATTCTTATGGGATTCGGCTTCCTGGCCTTTCTGCTGACAACAAGGCACATTAGTTTGAAGAAACCAAAACTATTCTGGGTTTCAGCAGCTGCCCCTTTGACATCAGTTATTCTGTCAACCCTGTTAGTCTTTTCTCTGAGAAATAAGGCTCATCACATTTCATTTATTGGGTACTTACCAAAGGGGCTTAATCCACCATCATCAAACATGTTATACTTCAATGGTCCTTACTTGGCTCTTGCTATCAAAACTGGCATTGTAACAGGGATCTTATCTCTCACAGAAGGAATTGCAGTAGGTAGAACATTTGCAGCACTTAAGAACTACCAAGTGGATGGAAACAAAGAAATGATGGCTATTGGTCTCATGAACATAGCTGGCTCTTGTTCTTCATGCTATGTCACAACAGGATCCTTTTCTAGATCAGCTGTTAACTATAACGCTGGAGCACAAACAGCAGTTTCAAATATAGTCATGGCTGCAGCTGTTCTAGTGACCCTTCTGTTTCTCATGCCTCTGTTCTACTATACACCAAATGTTGTCTTAGCAGCCATTATCATCGCTGCTGTGGTTGGGCTAATAGATTATCAAGCTGCATATAAATTGTGGAAGGTCGACAAACTTGANTTCTTGGCCTGTTTGTGCTCCTTTTTTGGGGTTCTATTCATTTCAGTACCTCTAGGCCTGGGTGTAGCGGTTGCCATATCAGTCTTCAAGATCCTGCTCCATGTCTCTCGACCCAACACTTTGGTTTTGGGGAATATACCAGGAACACAAATATTCCNCAACATAAACCAATACAAAGAAGCTTTGAGAGTTCCTTCGTTTGTCATTTTGGCNGTTGAGTCACCAATCTATTTTGCTAATTCAACTTACCTTCAAGAGAGGATACTGAGATGGGTTCGAGAAGAGGAAGAGCGAATAAAAGCAAATAATGGAAATCCATTGAAGTGCATAATTTTAGACATGACAGCTGTCACAGCCATAGACACAAGTGGACTTGAAACATTACGTGAACTCAGAAAGATGCTGGAGAATATATCACTTCAGCTCGTGTTGGTAAACCCTGTTGGAAATGTGATGGAAAAGTTACATACGTCAAAAATTTTGGATTCCTTTGGATTAAGAGGAGTCTATCTCACAGTGGGAGAAGCTGTGGCTGACATTACATCGTCNGGGAAAGCTCAGCCTTGATTTTCCATCAATGGCGTGCTAGCACAGAAGAAAGAGATCTTATAGGAACCATCAAACTTTCAGGGGGATAAACTATAACCTCTGAAGTCTTTGCCTGCAAGAAATACTCTTGTTTAAGTTTCTGCAACAGTCTAATTTATGTTAGTAGAAACCTTGAAAACAATATTACCCCGTAAAAAGGGAGGGGGGCCATTAAAATCAAGGGCCATTTTCTTTCAGAAGAGNGTTCCTTATCTCAGGTTGATGGTCCTGCCGATGTTAATTGTTACTCCATATATTTTCCGCTACTTTAGCAATTTTGTCTTTTATTAGAGGGAAAGAGTACCCNAGAGAGTCATGTCTTGATGACTTTTGTCGTGTAGAAAGATTGAGTGGTAAATAATAGAACTTTNAGTCTTTTAACGGAAGAACAAAGTAAGAATGGAAAAATGGTCTTCTTTTAGACTTCTTTTTTCTGTTACAAAACGAATCCACACAAGAGTTCAGTTGGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00043	387698	392584	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0008272 sulfate transport

GO:0055085 transmembrane transport

GO:1902358 sulfate transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0008271 secondary active sulfate transmembrane transporter activity

GO:0015116 sulfate transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000043s00003834.1	PF13792.1	Sulfate_tra_GLY	90	158	4.30E-13
Glyur000043s00003834.1	PF00916.15	Sulfate_transp	189	466	1.20E-94
Glyur000043s00003834.1	PF01740.16	STAS	522	640	1.20E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.607
SRR1783600	control	5.748
SRR1783602	moderate drought stress	20.540
SRR1811619	moderate drought stress	20.629

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	34.751
DRR006520	Root Summer glycyrrhizin high producing strain	34.066
DRR006521	Root Winter glycyrrhizin high producing strain	0.834
DRR006522	Root Winter glycyrrhizin high producing strain	0.744
DRR006523	Root Summer glycyrrhizin low producing strain	19.447
DRR006524	Root Summer glycyrrhizin low producing strain	19.139
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.905
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.739

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.306
SRR2868004	Drought Stress (root)	23.674
SRR2967015	Control (root)	19.306

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.960
SRR9715740	Leaf	21.553
SRR9715741	Leaf	14.272
SRR9715739	Root	2.375
SRR9715742	Root	26.224
SRR9715743	Root	22.829

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.483
SRR8749028	MeJA induced 9h	4.906
SRR8749029	MeJA induced 9h	2.359
SRR8749030	Uninduced	6.935
SRR8749031	Uninduced	4.014
SRR8749032	Uninduced	4.364

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.033
SRR8400027	Control - Root	48.568