Gene detail

Gene detail information of Glyur000043s00003828

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G16010.1	Pentatricopeptide repeat (PPR-like) superfamily protein
NR	XP_004486725.1	PREDICTED: pentatricopeptide repeat-containing protein At3g16010-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9LW84\|PP236_ARATH	Pentatricopeptide repeat-containing protein At3g16010
trEMBL	tr\|G7II50\|G7II50_MEDTR	PPR containing plant-like protein {ECO:0000313\|EMBL:AES68031.1}

Sequence

Transcript Sequence

>Glyur000043s00003828.1
GTTTGGAAGAAACGCTTGTGCTCTTTCGGCTATTGCTTGGTCGATGGGGTGAACTGTCAAGTNTGAAAAATCAAAGCGAAGGATTGCGAATGCGAATGCAAATGCAAATTAATACTAATAGGTTGAGTATAATTTGGTTTGCAGTTAGGGAGAGATTATTGATTGAGCTGTGAGAATGTTAGCGGTCTTCCACTCTATAAGAGGTTTTGAAAATCTCCATCATACATGAGCTGCGAATCCAATCCAGTAACGAGGGAGTTTTGGGTGCCACTGTTTGAATTTTGAAGCTCCCTTTTGATGTGGCTTTTCAAATCCATCCTTTGTTGTTTGGTGGGCGCGTGAAATGAGAGAGAAAAATTGTCACTNTCAATTTAAGTGAAGCAAGTTGATAGCTTGAAGCGTGCGGAGGCATATCCAAGCCTTTTTTGGGTAGCAACAATGCTTGCTGGATCCATTGCTAGGAGGAGAAGGATATCAACTTGGCCTCCTTTCTCTCAGAGAATAAAGCAAACAGAAAATGAGATTGTCCAAATGTTTCGCTTGCCCGATTCTGGAGAAGGAAACCATGACCCTCCCGTAAAAGGAGGGAGGGTATTGAGGAAGGACCCTTATGCTCGGACATTGGATGAGAGATTCATTAGGATTTTGAAAATATTCAAATGGGGACCTGATGCAGAAAAGGCATTGGAAGTGCTGAAGATTAAGCTTGACACTCGCTTGGTCNGCGAGGTTCTAAAGATAGATGTTGATGTCAATGTGAAGATTCAGTTTTTCAAGTGGGCTGGGAAGAGAAGGAATTTTGAACATGATTCAGCCACTTACATGGCTTTGATACGCTGCTTGGACGAAAATAGGCTGGTTGGTGAACTGTGGAAGACAATACAGGACATGGTTAAGAGTTCATGTGCAATTGGTCCTGCTGAACTGTCTGAAATTGTGAAGATCCTGGGCAAGGTTAAGATGGTCAACAAGGCATTGTCTGTCTTTTACCAGGTTAAGGGTCGCAAGTGCAGACCTACCGCGAGCACTTACAACTCTGTCATCTTCATGCTGATGCAAGAGGGGCATCACGAGAAAGTTCACGAGCTGTATAATGAAATGTGCAGTGAGGGTCATTGTTTCCCTGACACAGTTACATATAGTGCACTTATATCAGCATTTGCAAAGCTAAATCGAGATGATTCTGCCCTTAGCTTATTTGATGAGATGAAGGAGAATGGATTGCAGCCCACAGCAAAGATTTATACAACCTTAATGGGAGTATACTTTAAGTTGGGTAGGGTTGAGGAAGCTTTGGGCCTAGTCCAGGAGATGAGAATGCNGCGGTGTTCCCCAACCGTCTTTACTTATACAGAATTGATAAGGGGACTGGGGAAATCTGGTAGGGTTGAAGATGCATACATAACATACAAGAATATGCTGAAAGATGGTTGCAAACCCGATGTTGTCTTGATGAATAATTTGATTAACATTTTGGGTAGATTAAATCGCTTAAAAGATGCTATTGAGCTTTTTGATGNAATGAAATTGCTGAATTGTGCACCTAATGTTGTGACATACAATACCATCATCAAATCCTTATTTGAGGCCAGAGCTCCACCTTCTGAGGCTTCTTCATGGTTTGAGAGAATGAAAAAAGATGGAGTAGCCCCCAGCTCATTTACTTATTCAATTCTCATTGATGGTTTCTGCAAAACAAATCGAGTCGAGAAGGCTTTGTTGCTTCTTGAGGAGATGGATGAAAAAGGCTTTCCACCTTGTCCTGCTGCCTACTGCAGCCTGATCAATAGCCTCGGTAAAGCAAAACGCTATGAGGCTGCAAATGAGCTATTCCAGGAATTGAAAGAGAACTGCGGACGTTCAAGTGCTCGTGTGTATGCTGTCATGATTAAACATTTCGGAAAATGCGGGCGACTCAANGAAGCTATCAATCTTTTCAATGAGATGAAAAAACTCGGATGCATCCCTGATGTTTATGCTTATAATGCTCTCATGACTGGGATGGTAAGGGCAGACATAATGGATGAAGCCTTTTCCTTGTTTAGAACTATGGAAGAAAATGGTTGCACCCCTGATGTAAATTCTCATAATATTATCCTAAATGGCTTGGCTAGGNCAGGTGGCCCAAAGCGTGCTATGGAAATGTTTACAAAAATGAAGAATTCTACTATTAAGCCAGATGCGGTTTCTTACAACACCATTCTTGGCTGCCTTAGCCGTGCAGGTCTATTTGAAGAAGCTGCAAGGCTTATGAAAGAAATGAGTTCAAAGGGATTCCAGTATGATCTCATCACCTACTCTTCAATACTTGAGGCAGTTGGTAAGGTTGATGAAGATTGCAATATGGTAGGTTCATGAGAGCAACCNGGTATTTCCTTTTTTGGGTGACTCTGGCAATGCTGATTAACCAATAATACCCTTGAATTTCAACAATGATTTTGAATGGAAGGAACCAAATTTTCTGAAGGTATACGAACCATTCAAGAAAATCAAATTTCTGTATAATGCTTCAAAAACTTAAAAAATNCCCCCTCGGTGGTTGATCTCAATCTGAATAAGGAAATGTATGATATACTATTAAACTTCTACGTCATATTTAGTTTGTTTCAATATCGGGGCATTGAGGAGTATTCTATTGTTGAGGCGGCAAGCAGTGTATAACGCAATTACAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00043	362783	365629	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000043s00003828.1	PF13041.1	PPR_2	194	243	1.40E-12
Glyur000043s00003828.1	PF13041.1	PPR_2	268	312	1.00E-10
Glyur000043s00003828.1	PF12854.2	PPR_1	330	363	8.80E-07
Glyur000043s00003828.1	PF13041.1	PPR_2	369	419	6.70E-18
Glyur000043s00003828.1	PF01535.15	PPR	444	471	0.00044
Glyur000043s00003828.1	PF01535.15	PPR	479	508	1.10E-06
Glyur000043s00003828.1	PF13041.1	PPR_2	510	559	1.60E-14
Glyur000043s00003828.1	PF13041.1	PPR_2	580	626	3.40E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.754
SRR1783600	control	1.761
SRR1783602	moderate drought stress	1.990
SRR1811619	moderate drought stress	1.977

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.236
DRR006520	Root Summer glycyrrhizin high producing strain	3.316
DRR006521	Root Winter glycyrrhizin high producing strain	1.481
DRR006522	Root Winter glycyrrhizin high producing strain	1.482
DRR006523	Root Summer glycyrrhizin low producing strain	2.107
DRR006524	Root Summer glycyrrhizin low producing strain	2.172
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.722
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.707

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.711
SRR2868004	Drought Stress (root)	1.430
SRR2967015	Control (root)	1.707

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.684
SRR9715740	Leaf	1.443
SRR9715741	Leaf	1.190
SRR9715739	Root	0.242
SRR9715742	Root	1.760
SRR9715743	Root	1.545

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.298
SRR8749028	MeJA induced 9h	1.317
SRR8749029	MeJA induced 9h	1.151
SRR8749030	Uninduced	0.377
SRR8749031	Uninduced	0.086
SRR8749032	Uninduced	0.134

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.771
SRR8400027	Control - Root	2.293