Gene detail

Gene detail information of Glyur000043s00003826

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G79950.1	0	RAD3-like DNA-binding helicase protein
NR	XP_004486726.1	0	PREDICTED: regulator of telomere elongation helicase 1-like isoform X1 [Cicer arietinum]
COG	NP_578662.1	2.00E-35	DNA repair helicase rad3 [Pyrococcus furiosus DSM 3638]
Swissprot	tr\|Q8W4M7\|ERCC2_ARATH	2.00E-34	DNA repair helicase UVH6
trEMBL	tr\|K7M3U8\|K7M3U8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G43623.1}

Sequence

Transcript Sequence

>Glyur000043s00003826.1
AAACTTGGTGAGGAAAGTATTAATCTAATTTTGTTGCCGGTTTGAAGAGGAAACGAAGAAATGCCGACGTATAAAATCAGGGGAATCGACGTAGATTTTCCATATGAAGCGTATGATTCCCAGCTCGTTTACATGGACAAAGTCATGCAATCACTTCAGGAGAAATGTAATGCACTGCTGGAGAGTCCTACAGGAACCGGAAAAACACTATGTCTTCTCTGTGCCACCTTAGCCTGGCGGAAGAGTTTGGGTGGTTTCACAACTGGTGTGAGCATGAAGACCAGTGATAAGTCAGACGGTGTAGCTGAGGTTTCATCATCACAATCCGAGGCCTCAAGTTTTTCTACAATTGTATATGCTTCACGGACCCACAGCCAGATCCGTCAAGTAATTCAAGAGTTGAAGCGAACATCTTACAGGCCTAAGATGGTAGTCCTAGGATCTCGGGAGCAACTTTGCATTCATGATGACGTGAAGTTACTTCGTGGCAAAACACAAACAAATGCTTGTCGAGTACTCTGTCGAAGGCGTGGGAAGNGTCAATGTAGCCATCTCCAAAAAGTTCCTGATTACTTGAAGGACAATCCCCATCTTGGAGAAGAGCCTGTGGATATCGAGGACTTGGTAAATATTGGCAGAAGATTCGGGCCGTGTCCTTATTATTTATCAAAGGAGCTCCACAAGGTTGTTGATATAGTATTTGCTCCATACAACTATCTTATTGACCGAGGGAATAGAAAATCTCTGCAACTTTCTTGGCACAATAGTATACTCATATTTGATGAAGCTCACAACCTGGAAAGCATATGTGCTGATGCAGCCTCCTTTGACCTGCCTTCTTGGCTTCTAACAGCTTGCATTTCCGAGGCTCAAAATTGTATTGACCTTTCAATAGAAAGAAGAGATAAATCAAATGCTATTTTCTTTCTTGCAGCACTTCTACTAAAACTTGAAAAGCGTATTACTGAGGTGCCTATTGGATCTAAGGAGTTTGGGTATACCAAGCCTGGGCCTTATATCTATGAACTGCTGGCTGATCTTAATATCACACACAAGACTGCTTCTAAGCTTACNGGTATACTTGCAGAAGCTTCAACTCTCCTTGAGGAACATAATCAAGAGAAATCAACTGGCACCGTCTGCAGATTGGATATTATCAGTCAAATTCTTGACATTGTTTTCAGGGATGGAAGAACTGCTCATGCTAAATACTATCGTGTTCATGTGCGGGAGGTTGAGGCTTGGGCTGCCAGTGGTTCAAAAGGCAAGGTGTCAAGGACACTCAGCTGGTGGTGCTTTAATCCNGGATTAGCCATGGAAGAATTTCCTAAGTTTGGGGTTAGATCTATTATATTGACATCAGGCACATTATCCCCTATGGACTCTTTTGCTGAGGAATTGAAATTAGACTTCCCCATTCGGCTGGAAAATCCACATGTAATAAACTCAAATCAGATATGGGCTGGAGTTGTACCAGTTGGTCCTTCAGGNCGTACTTTTAACTCCTCTTACCGCACTCGCGATTCACTGGAGTACAAGCAGGAGCTTGGAAATGCAATTGTAAATTTGGCCCGAATCGTTCCTGATGGACTTCTTGTATTCTTCCCATCTTATTACCTTTTGGACCAATGCATTGGGTGCTGGAAAAGCTTGAGTAATGAAAATTCAACATCAATATGGGAGAGAATTTGCAAACACAAGAAACCAGTTATAGAACCTAGGGAATCTTCTCTGTTTGCATCATCAATTAAGGACTACTTAGCTAAGCTGAATGACACCTCTGCATCTGGAGCAGTTTTTTTTGCTGTTTGTCGCGGAAAGGTGAGTGAAGGATTAGATTTTGCAGATCATGCCGGAAGAGCTGTGGTAATTACTGGTTTGCCATTTGCCACAAGTACTGATCCTAAGGTTCGTCTAAAACGTGAATACTTGGATCAACAATCTCAGGCACAAGGAGAGTTGTTCAAGGTTTTAACTGGAGAAGGGTGGTATAACCAACAAGCCTCTCGAGCTGTGAATCAAGCTGTTGGACGTGTAATTCGCCATCGCCATGACTATGGAGCAATTATTTTCTGTGATGAAAGGTTTTCACATCCAAATCGTCAATCCCAAGTCTCTCGATGGATACAGCCTCACATCAAGTGTTACTCAAGATTTGGAGAAGTCGTTTACACTCTCACTCGATTTTTCCGGGATGGAAGAACTCGGGGGGGTCCTACAAAGCTGTCATTATTAGAAGCTGAAAATGAGGGAAATCTGGGAGAAATGCCTTCATCAGAGCAGCACATGGACAAATTTTACATGGAAAAGCTTCTCTCACCTTTGGTAACTCATTGGTTATGCATTATAGAGACACGATTTTTGAATCATATAATGCTATTGTTTGGCCCTCCAAGTACACNGGTGGCTCAAAATTGCACTTCAAAATCTACTTTGCTTGATATGAAAAAGGGTTGTGCTTCATTCACGGGGGAAATTCTGCCTGCCAATCGCTCATCTCTGTCTTCTGACCATGGAAGGATTGAAGGTTGTGAGTCTTGTGACAGTTCAAGCACGGTTTTGCACAAGAGGAGGACTGTACTATCACAAGAACACGACGGGGTTGATTTGGCTTATGGCTGTCACCTGGGTGAAAAATCAAGGGATATGCCGATAGCACCTTGTCTCACCAAGAAGCGTAGATTTATAGCAGGAGAGTATGACTTAACTCAACATTGTGGAAATTCTAATGAGCGTTCATCATCAGCCAGTCAAAATGCTCAAGGCGGTATAAATCTGCAATGTAANGATAACGAGACCTCCCAAAGTAGAAGTCTTGAGTTTGTTGAACAAAAGGGCAAACTTCCTGCTGATGAAACCAAAGGATCAGCATTCCTTGTTCAGGTCCGAGATAAACTCAGTGCNGCCGAATATATAGACTTTGTGGGTTATATGAAAGCTCTCAAGACCAAAACGATGAAGATTGGCGAAGTTTTACTACACATTTCTAGATTGTTCTCTGGAACCGAGAGGCAACCTCTCCTTAAAAGGTTCAAGGATTACATTCCAGCAAAATATCATTCTTTGTATGAGAAGTATGTTGAAGAAAAAAATTAA

Protein Sequence

>Glyur000043s00003826.1
MPTYKIRGIDVDFPYEAYDSQLVYMDKVMQSLQEKCNALLESPTGTGKTLCLLCATLAWRKSLGGFTTGVSMKTSDKSDGVAEVSSSQSEASSFSTIVYASRTHSQIRQVIQELKRTSYRPKMVVLGSREQLCIHDDVKLLRGKTQTNACRVLCRRRGKXQCSHLQKVPDYLKDNPHLGEEPVDIEDLVNIGRRFGPCPYYLSKELHKVVDIVFAPYNYLIDRGNRKSLQLSWHNSILIFDEAHNLESICADAASFDLPSWLLTACISEAQNCIDLSIERRDKSNAIFFLAALLLKLEKRITEVPIGSKEFGYTKPGPYIYELLADLNITHKTASKLTGILAEASTLLEEHNQEKSTGTVCRLDIISQILDIVFRDGRTAHAKYYRVHVREVEAWAASGSKGKVSRTLSWWCFNPGLAMEEFPKFGVRSIILTSGTLSPMDSFAEELKLDFPIRLENPHVINSNQIWAGVVPVGPSGRTFNSSYRTRDSLEYKQELGNAIVNLARIVPDGLLVFFPSYYLLDQCIGCWKSLSNENSTSIWERICKHKKPVIEPRESSLFASSIKDYLAKLNDTSASGAVFFAVCRGKVSEGLDFADHAGRAVVITGLPFATSTDPKVRLKREYLDQQSQAQGELFKVLTGEGWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFSHPNRQSQVSRWIQPHIKCYSRFGEVVYTLTRFFRDGRTRGGPTKLSLLEAENEGNLGEMPSSEQHMDKFYMEKLLSPLVTHWLCIIETRFLNHIMLLFGPPSTXVAQNCTSKSTLLDMKKGCASFTGEILPANRSSLSSDHGRIEGCESCDSSSTVLHKRRTVLSQEHDGVDLAYGCHLGEKSRDMPIAPCLTKKRRFIAGEYDLTQHCGNSNERSSSASQNAQGGINLQCXDNETSQSRSLEFVEQKGKLPADETKGSAFLVQVRDKLSAAEYIDFVGYMKALKTKTMKIGEVLLHISRLFSGTERQPLLKRFKDYIPAKYHSLYEKYVEEKN

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00043	341419	351270	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006139 nucleobase-containing compound metabolic process

molecular_function

GO:0003676 nucleic acid binding

GO:0003677 DNA binding

GO:0004003 ATP-dependent DNA helicase activity

GO:0005524 ATP binding

GO:0008026 ATP-dependent helicase activity

GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000043s00003826.1	PF06733.10	DEAD_2	99	259	1.10E-46
Glyur000043s00003826.1	PF13307.1	Helicase_C_2	500	692	3.30E-54
Glyur000043s00003826.2	PF06733.10	DEAD_2	99	259	1.10E-46
Glyur000043s00003826.2	PF13307.1	Helicase_C_2	500	692	3.20E-54

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.716
SRR1783600	control	1.659
SRR1783602	moderate drought stress	0.904
SRR1811619	moderate drought stress	0.827

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.291
DRR006520	Root Summer glycyrrhizin high producing strain	2.209
DRR006521	Root Winter glycyrrhizin high producing strain	1.676
DRR006522	Root Winter glycyrrhizin high producing strain	1.618
DRR006523	Root Summer glycyrrhizin low producing strain	1.069
DRR006524	Root Summer glycyrrhizin low producing strain	1.161
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.471
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.478

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.918
SRR2868004	Drought Stress (root)	3.424
SRR2967015	Control (root)	3.235

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.667
SRR9715740	Leaf	0.673
SRR9715741	Leaf	2.852
SRR9715739	Root	0.434
SRR9715742	Root	3.158
SRR9715743	Root	2.354

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.231
SRR8749028	MeJA induced 9h	7.454
SRR8749029	MeJA induced 9h	3.694
SRR8749030	Uninduced	0.557
SRR8749031	Uninduced	0.284
SRR8749032	Uninduced	0.286

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.857
SRR8400027	Control - Root	5.332