Gene detail information of Glyur000043s00003823 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G52330.1 | 5.00E-44 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| NR | XP_004486730.1 | 1.10E-109 | PREDICTED: uncharacterized protein LOC101505811 isoform X2 [Cicer arietinum] |
| trEMBL | tr|A0A076L4S1|A0A076L4S1_CICAR | 5.00E-110 | Late embryogenesis abundant protein {ECO:0000313|EMBL:AII99859.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00043 | 329235 | 330643 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000043s00003823.1 | PF03168.8 | LEA_2 | 82 | 176 | 3.00E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.387 |
| SRR1783600 | control | 19.163 |
| SRR1783602 | moderate drought stress | 22.380 |
| SRR1811619 | moderate drought stress | 22.875 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.456 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.057 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.074 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.206 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.766 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.017 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.093 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.890 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.371 |
| SRR2868004 | Drought Stress (root) | 0.374 |
| SRR2967015 | Control (root) | 0.309 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.571 |
| SRR9715740 | Leaf | 7.892 |
| SRR9715741 | Leaf | 7.651 |
| SRR9715739 | Root | 9.427 |
| SRR9715742 | Root | 6.957 |
| SRR9715743 | Root | 9.135 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.073 |
| SRR8749028 | MeJA induced 9h | 0.331 |
| SRR8749029 | MeJA induced 9h | 0.745 |
| SRR8749030 | Uninduced | 0.073 |
| SRR8749031 | Uninduced | 0.197 |
| SRR8749032 | Uninduced | 0.253 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.441 |
| SRR8400027 | Control - Root | 0.895 |