Gene detail information of Glyur000043s00003819 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G79910.1 | 1.00E-61 | Regulator of Vps4 activity in the MVB pathway protein |
| NR | XP_004486735.1 | 0 | PREDICTED: uncharacterized protein LOC101507745 isoform X1 [Cicer arietinum] |
| trEMBL | tr|G7II37|G7II37_MEDTR | 2.00E-151 | Regulator of Vps4 activity in the MVB pathway protein {ECO:0000313|EMBL:AES68018.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00043 | 310512 | 313169 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000043s00003819.1 | PF03398.9 | Ist1 | 15 | 171 | 9.30E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.546 |
| SRR1783600 | control | 0.570 |
| SRR1783602 | moderate drought stress | 0.313 |
| SRR1811619 | moderate drought stress | 0.329 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.765 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.876 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.677 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.684 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.688 |
| SRR2868004 | Drought Stress (root) | 1.529 |
| SRR2967015 | Control (root) | 1.500 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.179 |
| SRR9715740 | Leaf | 0.017 |
| SRR9715741 | Leaf | 0.035 |
| SRR9715739 | Root | 0.186 |
| SRR9715742 | Root | 0.283 |
| SRR9715743 | Root | 0.014 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.039 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.263 |
| SRR8749031 | Uninduced | 0.346 |
| SRR8749032 | Uninduced | 0.391 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.442 |
| SRR8400027 | Control - Root | 8.908 |