Gene detail

Gene detail information of Glyur000043s00003813

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G52280.1	2.00E-101	RAB GTPase homolog G3D
NR	NP_001237217.1	2.57E-138	uncharacterized protein LOC100305824 [Glycine max]
COG	YP_003795980.1	2.00E-13	hypothetical protein NIDE0273 [Candidatus Nitrospira defluvii]
Swissprot	tr\|Q9XER8\|RAB7_GOSHI	2.00E-135	Ras-related protein Rab7
trEMBL	tr\|Q40214\|Q40214_LOTJA	1.00E-138	RAB7D {ECO:0000313\|EMBL:CAA98171.1}

Sequence

Transcript Sequence

>Glyur000043s00003813.1
GTGTAGTTGTGGTCGGCGGCATCAGCCATCAGATTGTTAGGTGGCATTGATTTGTTTGGTACAATCATTCTATTTTGTGTTCGAATCGAAGATGTAATCAACCAATAATTGCTAATAATTTGCCAAATTGGTTCTTCTTCTTCTTCACCCACCTGTCCTCCCTCCAACCTCTGTTCCGTAGCTCACACGACACAACACAACACAACACAAAGCAAAGCGAATCCAAATTCCCAGAAACAAGTTTCCAATTATTGTCTTCATTTTTTTCACCCATGGCATCTCGCCGCCGCATGTTATTGAAGGTCATAATCCTNGGAGATAGCGGGTATGTGAATCGTAAGTTCAGTAATCAGTACAAGGCTACCATTGGTGCTGATTTTCTTACCAAGGAAGTTCAGTTTGAAGATAGGTTGTTCACTTTGCAGATCTGGGATACTGCTGGTCAGGANAGGTTTCAAAGTCTTGGTGTGGCTTTCTACCGAGGTGCAGATTGCTGCGTCCTTGTTTANGATGTAAATGTCATGAAATCTTTTGACAACCTTAATCACTGGCGAGAAGAATTCCTTATTCAGGCTAGTCCATCTGACCCTGAAAACTTCCCATTTGTGGTGTTGGGAAACAAGATAGATGTTGATGGTGGGAATAGCCGAGTTGTTTCCGAGAAGAAAGCAAAGGCCTGGTGTGCTTCCAAAGGGAACATACCATACTTTGAGACCTCTGCAAAGGAAGGATTTAATGTTGAAGCTGCTTTTCAGTGTATAACCAAAAATGCACTCAAGAATGAACCTGAAGAAGAATTGTACATGCCTGAGACGGTCGACGTTGGTGGCGGTGGCCGGCAACAGAGGTCGACAGGCTGTGAATGTTGACAAAAGTTCTTTGGATCAGCTTCACTTGCAAGCGTTTGAGGCCAAAATACAACATCCTTCAGTGATTTATAGTCAGTTATTTCAACAATTAAAAACCTAGGACAACGTACATCTTCTCCATCTTGTATCTCACTAGTGGGTTAGATGTTCTCCTGTTTATCTTTCTATTAACTTATAATATTTGTAATAAATGTTTTACCCCTATATTTCATCAGTAAATATATGCCGAGAATTCCANGTTGTGTTTGCTTATGCCATAAGATCTAAGATCCAAGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00043	267718	270754	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0006913 nucleocytoplasmic transport

GO:0007165 signal transduction

GO:0007264 small GTPase mediated signal transduction

GO:0015031 protein transport

cellular_component

GO:0005622 intracellular

GO:0016020 membrane

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000043s00003813.1	PF00071.17	Ras	19	168	2.00E-41
Glyur000043s00003813.2	PF00071.17	Ras	11	163	2.70E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.777
SRR1783600	control	13.060
SRR1783602	moderate drought stress	10.903
SRR1811619	moderate drought stress	11.630

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.132
DRR006520	Root Summer glycyrrhizin high producing strain	21.410
DRR006521	Root Winter glycyrrhizin high producing strain	72.785
DRR006522	Root Winter glycyrrhizin high producing strain	72.309
DRR006523	Root Summer glycyrrhizin low producing strain	17.585
DRR006524	Root Summer glycyrrhizin low producing strain	17.551
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.355
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.167

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.870
SRR2868004	Drought Stress (root)	50.202
SRR2967015	Control (root)	37.235

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	48.006
SRR9715740	Leaf	43.643
SRR9715741	Leaf	47.524
SRR9715739	Root	17.403
SRR9715742	Root	23.819
SRR9715743	Root	25.065

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.100
SRR8749028	MeJA induced 9h	21.057
SRR8749029	MeJA induced 9h	21.458
SRR8749030	Uninduced	58.857
SRR8749031	Uninduced	30.965
SRR8749032	Uninduced	35.203

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.680
SRR8400027	Control - Root	37.964