Gene detail

Gene detail information of Glyur000043s00003810

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G45688.1	4.00E-47
NR	XP_003597750.1	0	hypothetical protein MTR_2g101870 [Medicago truncatula]
trEMBL	tr\|G7II20\|G7II20_MEDTR	0	Late embryogenesis abundant protein {ECO:0000313\|EMBL:AES68001.1}

Sequence

Transcript Sequence

>Glyur000043s00003810.1
CGACACTTACTCCCGAAGCAGCCCTATTTCTGCAGCCAGCGAGGTTTGGATATTATCCCATCATCCCTTACTTTAAATTATTTACCTTTGAAAGAAGCATAGTGTCCTTCTTGCATTGGCCGTGGCCATTGCTTCTCTTTACTTCCTTTTCCGTTCGAAAGAGCAAAAAAAAAAAACGCTTTTTCTCATAGTGACACACANAGCTGAATTGTGTGCGCGCGTGTCCTTTCTCCTCAATTCTACTCAAAAAGAAAAACCATTATCTTTGTTGGCATTTTATTTATTTATTTGAGTTTCTTAATTACTACTTGTTCATTTTGCTGATACACATACACTGTTGTCTAGTAGTACCAGAGTGTGTTTGTGTGTGTTGTGTGAAATCATTTCCTGGGTGTCGTTCAATTCTCTATATTGAATTGAATACACTTCCAAGTTCAAATTTTGATATTAGTGTGGTGAGTGATGATGCTTTCGGCGAAATCAGAATCAGATATCACAAGCTTAGCACCATCATCACCATCAAGGTCACCGAAGCGCCCTGTGTACTATGTGCAGAGTCCTTCAAGAGATTCACACGATGGGGACAAGTCATCGTCGATGCAGGCAACACCAATATCAAACAGCCCCATGGAGTCACCTTCACACCCTTCATTCGGGCGTCACTCGAGGAACTCCTCTGCTAGCAGGTTCTCTGGGATTTTCAGGTCATCTTCTGGAAGGAAAGGGAGTAGGAAGAGGAATAATGATAAGGGTTGGCCTGAGTGTGGTGTCATTCTTGAAGAAGGGTCTTATCGTGAATTTGAGGACAAGGCCTTCACTAGGCGCTTCCAGGCTTTGATTGCTGTGTTCACTTTTGTTGTACTCTTCACNGTGTTTTGTTTGATCATTTGGGGTGCTAGCAGGCCTTACAAGGCACAAGTTACCGTCAAGAGCTTGATAGTACATAATCTCTATGTTGGAGAGGGTTCAGACTTCACAGGAGTCCCAACAAAAATCCTGACAGTTAATAGCACNTTACGCATGAGCATATATAACCCTGCTACATTCTTTGGCATCCATGTGCACTCCACACCCATCAATCTTGTCTTCTCAGACATCAGTGTTGCAACCGGTGAGCTGAAGAAATACTACCAGCCAAGAAAAAGTCACCGTATTGTATCAGTGAACCTGGAAGGTAATAAGGTTCCCCTATATGGGGCAGGATCGACCATGACAGTTTCCCAAACAGGTAGTGTTGAAGTCCCACTTACATTGAAGTTTGAAATCCGTTCGAGAGGGAATGTGGTGGGTAAACTGGTAAGGACAAAGCATCATAAGGAAATCACTTGTCCCTTGGTCATAAACTCTTCTGGATCAAAACCAATCAAGTTCAAGAAGAACTCATGCACATATGAATGATATCTGTACCCATTTTAATTAGGAGTTCATAAACACCTTGATCTTGAGATTGTAACTTGTGAAATTGTATAATCTAAAGTTTGTGAGTATTTCTGAGCTTCAGGAGGTCCATTTGCAAGAGAGGCAATCCTGAATTCCATATGTAGTTTTTAACTCTTGTGAGCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00043	258407	261127	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000043s00003810.1	PF03168.8	LEA_2	187	284	6.80E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	50.586
SRR1783600	control	50.964
SRR1783602	moderate drought stress	86.739
SRR1811619	moderate drought stress	85.918

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	58.935
DRR006520	Root Summer glycyrrhizin high producing strain	58.805
DRR006521	Root Winter glycyrrhizin high producing strain	156.246
DRR006522	Root Winter glycyrrhizin high producing strain	153.187
DRR006523	Root Summer glycyrrhizin low producing strain	38.786
DRR006524	Root Summer glycyrrhizin low producing strain	38.439
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.338
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.221

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	60.568
SRR2868004	Drought Stress (root)	59.894
SRR2967015	Control (root)	61.643

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.992
SRR9715740	Leaf	8.809
SRR9715741	Leaf	8.313
SRR9715739	Root	36.252
SRR9715742	Root	49.746
SRR9715743	Root	42.856

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.982
SRR8749028	MeJA induced 9h	10.228
SRR8749029	MeJA induced 9h	9.414
SRR8749030	Uninduced	3.051
SRR8749031	Uninduced	0.056
SRR8749032	Uninduced	0.840

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	76.657
SRR8400027	Control - Root	92.433