Gene detail

Gene detail information of Glyur000043s00003805

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G16140.1	1.00E-45	photosystem I subunit H-1
NR	NP_001236618.1	1.20E-87	uncharacterized protein LOC100499832 [Glycine max]
Swissprot	tr\|Q9SUI7\|PSAH1_ARATH	1.00E-80	Photosystem I reaction center subunit VI-1, chloroplastic (Precursor)
trEMBL	tr\|C6SX75\|C6SX75_SOYBN	4.00E-88	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G02240.2}

Sequence

Transcript Sequence

>Glyur000043s00003805.1
CAAACAACGTACCAAAATCCAAAGTATGTCATATACCAACCAACCGATCACACAACAGAATGAGAAGTGGAATTAATTAAACCATAATAATATGGCTTCTCTGGCAAGCTTAGCTGTTGTTCAACCNGCTGCTGCTGTCAAGGGCCTTCCTGGCACTTCCCTTACTGGAACTAAGCTCTCTTTCAAACCCTCTCGCCACAGTTTCACACCCAGGAATTTCAGGAGTGGCGCTGTGGTGGCAAAGTATGGTGACAAGAGTGTGTACTTTGATTTGGAGGATCTGGGCAACACTACAGGTCAGTGGGACTTGTATGGCTCCGATGCACCCTCACCCTACAACCCTCTTCAGAGCAAATTCTTCGAGACATTTGCTGCTCCATTCACAAAGAGGGGATTATTGCTCAAGTTTTTGATCCTGGGAGGTGGTTCCACCCTCGCTTACTTCAGTGCCACCGCTTCAGGTGACATTCTACCAATCAAGAAGGGCCCACAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTAATTTAGTTTCGGAATTCCATCTGTTTAATTAGNTCCCTCCCCCCACCCCTCCCCTTTCTTCTTTTGATCACTGAACATGTACATCTCTCTTCTTCCATAATGTGTAAGTATTCTTACAGCTTACTTCTAGGACCTGGATCCTTTGCAGCCGCTGCAGAGGCTGTAGAGAGATCTACTCTCTCTGTTTCTCTCCTCATTTTTCTCTCTCTCTTACTTTTTTCTCTCTCTTCCCTCACTCACAACACCCTGCTGCAGAGGCAACAGGGGCAGCAGGGGATCCGGAGTGTTACTTCTATTTAATGATGCTTATTTCCAGTCTAATACAGTGGCATTGCTTTAGTTTCCAATTGAAGCAAAGATAAATTAGCATGAGCTATTTCATTGGGATGTTGGCCTTAATTTGGATTTGGGGCTTNGTGGCCTTTCTTGAGTGACCCTTTTTGAGTACTTTGGAACTTGTATAATTTGTAACTATGGGGATGCTAGTATCAAACTTACTTTAAATTGTGTTAAACATATTAATATTGTATTTTTATATCATGATCATTGGAAATTCTTCCTAGTAATATATGTATTCAGGTAGATGTTTGTTATTTTGAGATATTGAAAAGGAGTTGAAGGGTCATGGGAAACGATAGACATGATACTTTGTGGTATCATAAAAAATCTCATCTTGGTAGCTACCGGACTACAAATCCTTAAAGAGGATAATATATCTCTGACAATGCTTCAAAGTGGATGATTATGTATGTTGACTCCTATGTACAAAAGGCAAGAATGGCTCATCAATAAACAATCAAGACTCCAACAAACACCTCTATGGGTCTAATTGGTGCTTTTGTAAGTCCAAGCCTCTCCAACTATATACTTGTTTTTCCTGCTTTAATCTTATTTATCCCTCCCTTTTTAGTGACGCGACGTGGGACTTCTCATGACTCCCAAGGTCTCAAGGTATGACACCTTCTTGTTGGTCACTACATTTGGAAGTTTTTGTTGCTGCTTTTCATCAACATCATTGTAGAAGTCATCTGAAATTGCGAAGGGGTCCTTCTTCATGTCTGAGTCACCTTGATCAGAGCCCCACCCCATGAAATCTGATAGTGTCATTGAACCTGGCATTTCTGCACTGCCCTTGTCTATCTCTTCTCTAGGACTCGGCCTTGAAATCGAGATTCTGGCTGCAGAGCTCTTTCTTCCTGATAGGTTTTGAGCTTGATAATCTGCTTGAAGTACATCATCTATTCTTGAAAGTACTGTGAAGGCCAAACTTTCCAATATTCTTGAATAGCTCTCNAGAACTGCTTGCCCAACATCCTGCCAAGATAACAAATCCTTTATCATATTAGTTAAACACAATCCAACCTCATTCATGCAGCAGAAAATGAAAAACATTCAGATATGATGTTGTCCAAATGTTACTTGAGACCATATATATGAACCTCACTTATTTAGGACATGCATGCTCTTACCCTGTTGTATTGGATTTTGCTTATATCCAATGCAGATTGAGGAATGCCAGGGAAACGGTGCTTTAAGAGAAGTAAGATGGTTTCTGCTCTCTCTTCAAAGAGCTCTCTTTTCTCCAAACTCACAGCAGAACCCCAAGTTGATTTGGAATCTTTTTGGTTCATTTTTCGCTTCCAAATCACTATAGATGCTTCAATTCTATTCTTGAGATCTAGGATTTTATGTTCTGACGATAAGTCCATGGTTGATAGGAACTGGTCAGGATCAAAAAATTCAACAGTAATGCTCCTGTACGCTGAGTCTCCTAGACTTGCTCTTCCATTCTGAAAAATAAGAGAAATAAAATTTTATAGTGTGTAAAAAAGATGTTGGAATACTGATGCAGGTACTAGTAACTTTTAAGCAAATTAATAGTATTAGTTTTTTTTTTTTTATGTCTCACCTTGGGCAGGGATTCAATATAGTTTTCAGGGATCTCCATTTCTGTTAAAACTTGAGCATTTATTGCCATGGCTGCTTTAAGTACTTGATTTACACTATCTTTTTGATATTGTAGAAATTTTCTAGCCACATCAGATAGACCTTCTGTGGGAACCTTTGGTGTGGGTAACCACCACTTNTCATCATTTTTTTTCTTTGCACTCTCTTGATCTGAATCATCTGCATCTTTTGATACATAATAGAACTCATTTTGATCTTTGAAGTTATCCAAACATTCCTGCTCATCATCAATTCAAAATAATTAACAATCAATTTAAACANGTAGAAGAATAATGATCATCATGTCTAGCTCGAGAGGGGAGGAATGAGCAGGCAAGGTTTGTGATCTTACAAGAAGCATTGCATCAAGCTTGCGCAAGGCAGGGACATTCATGTGGAGATCTGTTCGTTGTCGCGTCGTCATAATCTATTCAATCAACGATCAGGTTCAATCATATAGAAATCATGAGTATAGAAAGAATAACATTATACATACAAATATGTGTGTGTGCACGCGCGCGTGCATGCATGCGAGCATGTGTGTAGAGAGAGAGAGAGAGGGGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00043	244901	248358	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015979 photosynthesis

cellular_component

GO:0009522 photosystem I

GO:0009538 photosystem I reaction center

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000043s00003805.1	PF03244.9	PSI_PsaH	7	145	3.40E-69

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.048
SRR1783600	control	0.048
SRR1783602	moderate drought stress	0.063
SRR1811619	moderate drought stress	0.075

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.018
DRR006520	Root Summer glycyrrhizin high producing strain	0.035
DRR006521	Root Winter glycyrrhizin high producing strain	0.073
DRR006522	Root Winter glycyrrhizin high producing strain	0.072
DRR006523	Root Summer glycyrrhizin low producing strain	0.036
DRR006524	Root Summer glycyrrhizin low producing strain	0.036
DRR006525	Leaf Summer glycyrrhizin high producing strain	132.294
DRR006526	Leaf Summer glycyrrhizin high producing strain	131.365

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.218
SRR2868004	Drought Stress (root)	2.872
SRR2967015	Control (root)	1.310

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	95.460
SRR9715740	Leaf	53.298
SRR9715741	Leaf	72.250
SRR9715739	Root	0.350
SRR9715742	Root	0.254
SRR9715743	Root	0.301

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.381
SRR8749028	MeJA induced 9h	2.244
SRR8749029	MeJA induced 9h	1.304
SRR8749030	Uninduced	1.981
SRR8749031	Uninduced	0.212
SRR8749032	Uninduced	2.454

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.305
SRR8400027	Control - Root	0.947