Gene detail

Gene detail information of Glyur000043s00003802.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G79840.1	HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain
NR	XP_003546423.2	PREDICTED: homeobox-leucine zipper protein GLABRA 2-like [Glycine max]
Swissprot	tr\|P46607\|HGL2_ARATH	Homeobox-leucine zipper protein GLABRA 2
trEMBL	tr\|I1MCR0\|I1MCR0_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G01960.1}

Sequence

Transcript Sequence

>Glyur000043s00003802.1
CCTCGTTCCTCTCTGCCTGCCATTAGCTATAGCCCCTCTTCCATGTAAGTAAGTAAGTAATGTACCCCTCAGATGACATCGCTCCTTAAAACACTCTTCAATATTCATATCATTGCCAATGGGTGCAGACATGTCCAACAATCCACCCCCAACTTCTCGCGCCAAGGACTTCTTCGCCTCTCCAGCTCTCTCTCTCAGCCTCGCGGGGATTTTTCGCCATGGTGGAGTGGCGGAGGAGGCTGAGGGGTCGGGTTTTAACCTGGAGGTGGAGGAAGGGGANGAAGGGAGTGGAGGAGGTGAGCGCGTGGAGGAGAATATTAGCAGCGAGAACTCGGGTCCCACGAGATCCAGATCAGAGGACGATTTCGAAGCAGAATTAGGTGATCATATTGAAGATGACGATGGTGGTGACGGGAACAAGAACAAGAAGAGGAAGAAATATCACAGGCACACCGCTGAACAGATCAGAGAAATGGAAGCGCTTTTCAAAGAGTCACCGCATCCGGATGAAAAGCAGAGGCAACAACTTAGTAAGCGGTTAGGCCTTGCTCCGAGGCAAGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATCAAGGCAATACAAGAGCGTCATGAAAATTCTCTGTTGAAGACAGAAATAGAGAAACTGAGGGAGAAAAATAAGACCCTCCGAGATACCATAAACAAAGCTTGTTGCCCCAACTGTGGCGTCCCCACCACAAGCAGAGATGGTGCCATGCCAACTGAAGAACAACAACTACGCATTGAAAATGCCAAACTCAAAGCTGAGGTAGAGAAGCTCCGAGCAGCTTTAGGGAAATACGCACCAGCAGGGACAACGTCCCCTTCATGTTCTGCTGGCCATGACCAAGAGAACAGAAGCTCTTTGGATTTTTATACTGGGATTTTTGGACTTGATAAGTCAAGAATAATGGATATAGTGAACCAAGCAATGGAGGAGCTCATAAAGATGGCTACCGTGGGGGAACCATTATGGCTCCGTAGCTTTGAGACTGGTCGTGAAATACTCAACTATGATGAATACATGAAGNAGTTCGCAGTTGAAAATTCAGACAATGGAAGGCCAAAGAGATCCATAGAAGCCTCGAGAGAGACGGGGGTTATTTTCGTTGATCTCCCTCGGCTTGTCCAATGTTTTCTAGATGCTAACCAATGGAAGGAGATGTTTCCGTGTTTAATATCTAAGGCGGCAACTGTTGACATGATATGCAATGGAGAAGGGTCAAACAGGAATGGTGCCGTGCAATTGATGTTTGCTGAGCTGCAAATGCTCACTCCAATGGTGCCCACCAGAGAAGTCTATTTTGTCAGATACTGCAAACAGTTGAGTGCTGAACAGTGGGCAATCGTTGATGTATCCGTAGACAAGGTAGAAGACAATATTGATGCGTCCCTCGTGAAATGCAGAAAACGCCCATCAGGTTGCATAATTGAGGACAAGTCAAATGGTCATTGCAAAGTAATCTGGGTGGAGCACTTGGAGTGCCAGAAGTGCACAGTCCATACAATGTATCGCACCATTGTTAACAGCGGCCTAGCCTTTGGGGCAAGGCACTGGATTGCGACCCTTCAACTTCAATGCGAACGTCTAGTTTTCTTCATGGCAACAAACGTCCCCATGAAGGATTCAACCGGTGTTGCCACGTTGGCTGGGAGAAAAAGCATTTTGAAGCTGGCACAAAGAATGACGTGGAGTTTCTGCCATGCAATTGGCGCGTCAAGCTTCCACACATGGACCAAGGTTACTAGCAAAACCGGGGAAGACATAAGGATCAGTTCTAGAAAGAACTTGAATGATCCTGGTGAACCTCTTGGTTTGATATTGTGTGCAGTTTCTTCTGTATGGTTGCCTGTATCTCCTAATGTTCTGTTTGATTTCTTGANGGATGAAGCTCACCGGACTGAGTGGGATATCATGTCTAGTGGTGGAGCAGTGCAATCCATCGCAAATTTAGCCAAGGGACAAGACCGAGGCAATGCGGTAACCATCCAAACAATGAAATCCAAAGAAAACAGTATGTGGATACTGCAAGATAGCTGCACAAACTCTTATGAGTCAATGGTGGTATATGCTCCTGTAGACATTACTGGTATGCAGTCTGTGATGACGGGTTGTGATTCAAGCAATCTTGCCATACTTCCCTCAGGTTTCTCAATTGTTCCTGATGGCCTTGAGTCAAGACCAATGGTCATTACTTCAAGGCAGGAAGAGAAAAATACAGAGGGAGGGTCTTTGTTTACAATAGCATTCCAGATCCTTACCAATGCTTCTCCTACAGCGAAATTAACTATGGAGTCTGTGGACTCGGTCAACTCTCTTGTATCTTGTACATTAAGAAATATCAGAACAAGTTTACATTGCGAAGATGGTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00043	228373	234058	+

Gene family

Gene family	subfamily
Transcription Factors Family	HB
EAR motif-containing Proteins	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0008289 lipid binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000043s00003802.1	PF00046.24	Homeobox	105	160	1.40E-18
Glyur000043s00003802.1	PF01852.14	START	277	498	5.50E-66

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.717
SRR1783600	control	3.794
SRR1783602	moderate drought stress	4.774
SRR1811619	moderate drought stress	4.763

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.305
DRR006520	Root Summer glycyrrhizin high producing strain	5.175
DRR006521	Root Winter glycyrrhizin high producing strain	0.147
DRR006522	Root Winter glycyrrhizin high producing strain	0.045
DRR006523	Root Summer glycyrrhizin low producing strain	3.324
DRR006524	Root Summer glycyrrhizin low producing strain	3.264
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.105
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.027

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.956
SRR2868004	Drought Stress (root)	7.102
SRR2967015	Control (root)	7.633

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.920
SRR9715740	Leaf	5.592
SRR9715741	Leaf	6.347
SRR9715739	Root	0.560
SRR9715742	Root	7.801
SRR9715743	Root	6.063

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.205
SRR8749028	MeJA induced 9h	0.826
SRR8749029	MeJA induced 9h	0.187
SRR8749030	Uninduced	0.839
SRR8749031	Uninduced	0.392
SRR8749032	Uninduced	0.107

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.923
SRR8400027	Control - Root	4.725