Gene detail

Gene detail information of Glyur000043s00003788.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G29080.1	5.00E-79	phytochrome-associated protein 2
NR	XP_003597715.1	0	Auxin-responsive protein IAA [Medicago truncatula]
Swissprot	tr\|Q9ZSY8\|IAA27_ARATH	5.00E-99	Auxin-responsive protein IAA27
trEMBL	tr\|G7IUP2\|G7IUP2_MEDTR	0	Auxin-induced protein {ECO:0000256\|RuleBase:RU004549}

Sequence

Transcript Sequence

>Glyur000043s00003788.1
CTGGGCTTCATATTAATATATCATAGCATAACTGCAGTTTGAGCTCTGCTTTCTGACTTCTTCCTTGCTTACTCTGCTCTTTCTTATAAAGCTTTGTATACTTATCACAAACAATATACTTCACCACTNGTTTAAAAACTTGTGTTGCCTATTTGGGATCCATTCATTTTGATGTCTACACCATTAGAACATGATTACATAGGTTTGGCAGAGAATCCGTCATTGGACGGAATCTCTGACAAAATATCTTCTTCTTCTTCTTCTGTTGCTTCCACCCTCTCCTCTGAGGATGGTAAGGCCTCATCTCTCAACTTCAAGGAGACAGAGCTGAGGCTTGGTTTGCCAGGTTGTGAGTCTCCTGAGAGGAAATCAGGTTGTGGGGTCTCTTTCTTTGGTGGCAAGGATTTGAAGAACAAGCACAATGTTTGTTCTCCTTTGAAGAGCCTTGTGGCTGGGGTTGGGGCTAAGAGGGGCTTCTCTGATGCTATAGACGGGTCTTCTGGGAAATGGGGTTTCTCTATGAATGATGGATCTGAGGTTGATTTGGGAAAAGGAGCTGCTTTGTTCTCTCCCAGAGGAGGGAATGTTGGNAAGCCTTCTCTTGTTGGTTTGGAGACTCAATCTAAAACCCAGCAGCAGGCTAATAATGCAAATGCACCAACCACCAAAGAGGCTGCCAAGCCAGTACAGGAAAAGAATAAGCACGTTGCTGGAACAAATGAGCATGNTACTGCTCCTGCTGCAAAGGCACAGGTTGTGGGATGGCCACCAATTCGATCCTTTCGAAAGAACACGATGGCCTCTAATTTGACAAAGAACAATGATGGAGCTGAGGGAAAACCAGGATTCGGTTGTCTCTATGTAAAGGTCAGTATGGATGGTGCCCCATATCTCAGAAAGGTTGATCTCAAAACCTACAACAACTATGTGGAACTTTCTTCAGCTCTTGAGAAGATGTTCAGCTGCTTCACCATTGGTCAATGCAATTCTCCTGGACTTCCTGGGAAAGATGGACTAAGTGAGAGCTCTTTGAGGGATCTTCTTCATGGCTCTGAATATGTTCTTACATATGAAGATAAAGATGGAGATTGGATGCTCGTGGGCGATGTTCCTTGGGGGATGTTCACTGACTCGTGTAGGAGACTAAGGATCATGAAAGGCTCTGAGGCAATTGGGCTAGCTCCAAGGGCCATGGAAAAAGCTAGGAGCCAAAACTAGTGCAGAAAAACCGGTTGAACCAAAGTTATTCACTGAAGCGTATAAATGCAAGGAAGTTTGGGCTTGTGGTTCTGTTCCTAATCAACATATATGTAATTCAGTGTCTCAGTTTTTGTGCATTTATAGTCTGACAAGTTCTCTATCAGTAGAATTTAACTGGAAACATCCAGACAATATATACACATTTTGTTTGCTTCTCTATTTTGTGTGTCTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00043	147940	150636	-

Gene family

Gene family	subfamily
Transcription Factors Family	AUX/IAA
EAR motif-containing Proteins	AUX/IAA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000043s00003788.1	PF02309.11	AUX_IAA	46	340	5.70E-84

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.201
SRR1783600	control	23.960
SRR1783602	moderate drought stress	19.176
SRR1811619	moderate drought stress	19.062

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	47.367
DRR006520	Root Summer glycyrrhizin high producing strain	47.204
DRR006521	Root Winter glycyrrhizin high producing strain	16.421
DRR006522	Root Winter glycyrrhizin high producing strain	16.126
DRR006523	Root Summer glycyrrhizin low producing strain	38.279
DRR006524	Root Summer glycyrrhizin low producing strain	37.766
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.175
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.916

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	68.884
SRR2868004	Drought Stress (root)	90.748
SRR2967015	Control (root)	77.122

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	65.786
SRR9715740	Leaf	41.364
SRR9715741	Leaf	58.452
SRR9715739	Root	41.640
SRR9715742	Root	85.604
SRR9715743	Root	84.592

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.379
SRR8749028	MeJA induced 9h	5.042
SRR8749029	MeJA induced 9h	4.799
SRR8749030	Uninduced	2.221
SRR8749031	Uninduced	0.429
SRR8749032	Uninduced	1.330

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	83.103
SRR8400027	Control - Root	114.689