Gene detail

Gene detail information of Glyur000043s00003780

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G16240.1	2.00E-96	delta tonoplast integral protein
NR	XP_003597702.1	6.71E-154	Aquaporin [Medicago truncatula]
COG	YP_007100376.1	3.00E-39	MIP family channel protein [Chroococcidiopsis thermalis PCC 7203]
Swissprot	tr\|Q41951\|TIP21_ARATH	2.00E-141	Aquaporin TIP2-1, N-terminally processed
trEMBL	tr\|G7IUM9\|G7IUM9_MEDTR	3.00E-154	Major intrinsic protein (MIP) family transporter {ECO:0000313\|EMBL:AES67953.1}

Sequence

Transcript Sequence

>Glyur000043s00003780.1
CTCAATATTGTACTTGACAATTTCTACTATATATAGCTCACCATAGAAGCCTTTTGAGCTATATTTCTAAATTCAGAACANTTCCTTATCTTTTATTCTTTATCCTCTCCTCTATCTGAGGCTCTTGTAGAAACTTCTGAAGATGGCTGGCATAGCATTTGGACGCTTCGATGATTCTTTCAGTTTGGNCTCCATCAAGGCCTATGTTGCTGAGTTCATCTCAACCTTGCTCTTTGTTTTTGCTGGTGTTGGTTCAGCCATAGCCTATGCTAAGTTGACATCAGATGCAGCTCTTGATCCTGCCGGGTTGGTAGCGGTTGCTGTTTGCCATGGTTTTGCTCTCTTTGTTGCTGTTTCTGTTGGAGCCAACATTTCTGGTGGCCATGTCAACCCAGCTGTGACCTTTGGTCTGGCTATTGGGGGCCAGATCACCATCCTCACTGGCATCTTCTACTGGATTGCACAGCTTCTTGGCTCCATAGTGGCATGTTTACTCCTCAAGTTTGTCACAGGAGGCTTGACTGTTCCCATCCACAGTGTTGCTGCGGGGGTTGGAGCTGGTGAAGGAGTTGTGACTGAGATTATCATCACATTTGGGTTGGTGTACACTGTGTATGCCACAGCAGCAGACCCAAAGAAGGGTTCATTGGGCACAATTGCACCCATTGCCATTGGTTTCATTGTTGGTGCCAACATCTTAGCAGCAGGGCCATTCTCTGGTGGCTCAATGAATCCAGCACGCTCCTTTGGCCCTGCAGTTGTCAGTGGTGACTTCCATGNCAACTGGATCTACTGGGTTGGTCCTCTTNTTGGTGGTGGTTTGGCTGGTCTCATCTATGGCTATGTGCTCATGCCCTCTGAACATGCACCTCTGCCCACTGATTTTTGATTGGATCAAGGTTGTTTGTTGTCTGTGTAATTTTCCTGTTCCTCCTCAATAAAGGAAGAAAAAAGCAACTCTAGCTTTTTCTTTCCTTTTGTTTTTCTTTTTAGTGTAAAGCGTTTGAGTCATTGTTTTCCTGTAAGGATTCAAGAGGTTGGCCATGTAGTGCAAATTTGGATATTAATTGNGCAGATTTTACATTCTTTTGTGAATATTCATAGAACATTGGTATGGTAAATTGGGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00043	115777	117754	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000043s00003780.1	PF00230.15	MIP	14	232	9.00E-77

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.975
SRR1783600	control	11.033
SRR1783602	moderate drought stress	8.475
SRR1811619	moderate drought stress	8.200

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	43.244
DRR006520	Root Summer glycyrrhizin high producing strain	43.501
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	16.358
DRR006524	Root Summer glycyrrhizin low producing strain	16.591
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.162
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.515

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	111.968
SRR2868004	Drought Stress (root)	62.332
SRR2967015	Control (root)	51.966

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.500
SRR9715740	Leaf	0.949
SRR9715741	Leaf	5.591
SRR9715739	Root	24.147
SRR9715742	Root	6.841
SRR9715743	Root	9.698

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.059
SRR8749029	MeJA induced 9h	0.054
SRR8749030	Uninduced	0.028
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.336

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.107
SRR8400027	Control - Root	30.824