Gene detail information of Glyur000043s00003778.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G32230.1 | 3.00E-166 | proteinaceous RNase P 1 |
| NR | XP_004486770.1 | 0 | PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q66GI4|PRRP1_ARATH | 0 | Proteinaceous RNase P 1, chloroplastic/mitochondrial (Precursor) |
| trEMBL | tr|I1MXM3|I1MXM3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G35850.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00043 | 109315 | 112992 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K18213 | PRORP | EC:3.1.26.5 | RNA transport | map03013 |
| RNA transport | map03013 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000043s00003778.1 | PF01535.15 | PPR | 83 | 106 | 0.22 |
| Glyur000043s00003778.1 | PF13812.1 | PPR_3 | 156 | 188 | 0.0029 |
| Glyur000043s00003778.1 | PF13812.1 | PPR_3 | 191 | 222 | 0.0099 |
| Glyur000043s00003778.1 | PF11977.3 | RNase_Zc3h12a | 376 | 479 | 6.80E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.718 |
| SRR1783600 | control | 3.655 |
| SRR1783602 | moderate drought stress | 2.751 |
| SRR1811619 | moderate drought stress | 2.640 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.015 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.870 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.131 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.056 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.903 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.703 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.505 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.812 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.697 |
| SRR2868004 | Drought Stress (root) | 10.905 |
| SRR2967015 | Control (root) | 11.458 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.965 |
| SRR9715740 | Leaf | 11.042 |
| SRR9715741 | Leaf | 7.062 |
| SRR9715739 | Root | 2.434 |
| SRR9715742 | Root | 3.605 |
| SRR9715743 | Root | 3.540 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.602 |
| SRR8749028 | MeJA induced 9h | 9.471 |
| SRR8749029 | MeJA induced 9h | 4.094 |
| SRR8749030 | Uninduced | 5.943 |
| SRR8749031 | Uninduced | 4.652 |
| SRR8749032 | Uninduced | 3.116 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.128 |
| SRR8400027 | Control - Root | 10.486 |