Gene detail

Gene detail information of Glyur000043s00003768

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G16290.1	0	AAA-type ATPase family protein
NR	XP_003546955.1	0	PREDICTED: ATP-dependent zinc metalloprotease FtsH-like [Glycine max]
COG	YP_007162923.1	2.00E-103	membrane protease FtsH catalytic subunit [Cyanobacterium aponinum PCC 10605]
Swissprot	tr\|P51327\|FTSH_PORPU	2.00E-97	ATP-dependent zinc metalloprotease FtsH {ECO:0000255\|HAMAP-Rule:MF_01458}
trEMBL	tr\|K7M918\|K7M918_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G02170.2}

Sequence

Transcript Sequence

>Glyur000043s00003768.1
GTGAAATGTCTAGTGCAGCAAAAACAATAGGAAAAGCCAGTTATCCAAAGAGGCCGAATCAGTAAGCACTGTCTCCTCCTTCAACTCTGAAGTCGTTGTTCAACTTTCATCGCCCGAGCTCATGCTCCTGCAAATTTGAAATGTCCCTCTAATCTTCTTCATCATTCATCAATGGCAATGGCTGCACCTACCACTACATACACGATAATGAGACTTAGACTGAGACTGTAATTGTAGCGTGTCTCCATGGCTTCCCATTGCCTCCTTCATCATTCATCATCACCATTCTCATCGTTCCTAAACCCAAAATTCAAAAGGCTTCCGAAACCTCCGAAATTCCGTTCCATCTCGTCGCGAATTCAAACCCCAGAACCCGACAACAATGACGACAAGAATAAAACCTCGAACAACCACAACCCCCTCGATTTCCTCAAGCTCTCCGTAACCCTCACCGTTATCTCCGCTTCCCTCCCACAACCCGCCGCCGCCGCATCCGCCACCGTCAAGGGAAAGAAACGGGCACCCAAAAAACAATCCACCAAAAAGGTCGAAGCTTTATCTGCGNAGGAGCTTAAATCATGGACCCAGGGTCTTCCCGTTGTTTCAGAACGCCTTCCATACAGCGAAATCGTGGAACTCAACAAAGCTGGGAAGCTCAAGCACATAATTAAGCCCTCTTCTGCGAACCTGAGGCAGCGTGCAGAAGCAGTTTTAGTGGTTCTGGANGATTCTAGAGTGTTGAGGACAGTGTTGCCATCACTTGAAAGTGATGCCAAGTTTTGGGGTTCATGGGATGAGTTGAAGATTGAAACTTTGTGTGTGAATGCATACACACCACCCCTCATGAGTCCAGAGTTGCCACCTCCTCTCTTGTCAANGATTTGGGGTTCCCTTCCACTGCAAGACCTTGTGACTTCCCTTGCTAATAGGATGAAGCCTAAGAGGGAAACAAAGAAGGNTGTGGAGTTGAGAAAAGCTAGGATGGAGCTGCAGAGACAGAAGAAAGAGGATCTTAGGAGGGGGAGGAGGGAGAGGGAGATGATGGAGAGGAGTATTAAGGTTCAGAAGAAAGAGGAGGAGAGGAGAAGNAAGAGACAGATAAGGAAGGAAAGGTATCAGCAATCGTTGCTCGAGGCTAGGAACAGGTCCATGATGATGACTGATTTTTGGTATAGCATGGCAAAGAATAAAGGCCTTGCCAATGCACTTGGGGTGGTTTTCTTCTACATTTTTTATAGGACTGTGGTGTTTAGTTATAAGAAGCAGAAGAAGGATTATGAGGACAGGCTCAAGATTGAGAAAGCTGAGGCAGAAGAGAGGAAGAAGCTGAGGGAGTTGGAGAAGGAGATGGGGTGGGATGAAGGTGATGATGATGAGGAGGGTGAGCAAGGGGAAGGGGAGGATAATCCTTATATGAAGATGACAAAGCAGTTTATGAAATCTGGGGCGCGTGTTCGGAGAGCACAGAACAGAAAGCTTCCCCAGTATCTTGAGAGAGGTGTGGATGTCAAGTTTAGTGATGTTGCTGGTTTGGGTAAAATACGCCTTGAACTTGAGGAGATTGTTAAGTTCTTTACTCATGGAGAGATGTACCGAAGGAGAGGAGTCAAAATACCAGGTGGCATACTTCTTTGTGGCCCTCCTGGAGTGGGAAAGACATTGCTGGCAAAAGCAGTAGCTGGTGAGGCAGGGGTTAATTTCTTCTCTATTTCCGCTTCACAGTTTGTGGAAATATATGTCGGTGTTGGGGCTTCTCGTGTCCGATCACTTTACCAAGAAGCCAAGGACCATGCTCCATCTGTTGTCTTCATTGATGAGCTGGATGCTGTAGGAAGGAAGCGTGGTGTGATTAAAGGTTCAGGTGGACAGGAACGTGATGCTACTCTCAATCAGCTCCTGGTGTGCTTAGATGGATTTGAAGGAAGGGGGGAGGTGATCACTATTGCATCCACAAANCGACCAGACATTCTGGATCCAGCACTTGTAAGACCTGGTCGGTTTGATCGGAAAATATATATCCCCAAACCTGGTCTCATAGGCCGCATGGAAATTCTAAAGGTTCATGCTCGTAAAAAGCCAATGGCTGAAGANGTGGACTATATGGCTGTTGCTAGTATGACTGATGGAATGGTTGGTGCAGAGCTAGCTAACGTTGTTGAGGTTGCTGCTATCAATATGATGCGGGACTCAAGGACTGAGATTACTACCGATGACTTATTACAAGCTGCACAAATGGAAGAAAGAGGAATGCTAGATAAAAGGGAGAGAAGCGAAGAGATATGGAAACGAGTAGCTATAAATGAAGCTGCAATGGCTGTTGTGGCTGCGAACTTGCCTGTCTATAAAAATATTGAGTTTATCACAATCGCTCCTAGAGCTGGCAGGGAATTGGGTTATGTTAGGGCGAAGATGGATTCAATCAAAGGAATGCTCACTCGACAATCCCTCCTTGATCATATTACTGTTCAACTAGCTCCCCGTGCAGCTGATGAAATTTGGTTTGGGAGTGGTGAGTTGAGTACGATATGGGCCGAAACTGCAGACAATGCTAGGTCTGCAGCAAGGATATTTGTTNTTGGTGGACTTTCTGAGAAGTACCATGGAATGTCCAATTTCTGGGTGGCAGACCGAATTAATGAAATTGATTCGGAAGCAGTGCGGATTCTCAACTTGTGCTATGAACGTGCAAAAGAGATGCTGCAGCAAAATAGAACGCTGATGGATGCTGTGGTGGATGAACTTGTTGAGAAGAAAACCTTAACCAAACAAGACTTCTCTCATCTTGTAGAGTTGCATGGCTCCATAAAACCAATGCCTATGAGCATACTTGACATTCGGGTTGCCAAGCGTAGAGAATTCCAAGAATTGATTAGTAGTGGAAAGGGAACAGACAAATTATAGATAGGNGCAAATGCAAATGCCCCACCAATTTTGAGAATTTTCTACTATATGCATATTTACTGTACCTTATTATTGATGTATCATATTCTTCAAGATGTGGACAAGCCAAGTTACAACCTGAGCACTCCTATTTTTGTGTGGCCATTCTTGAGCTATTGTTCATGTTACCTCTAGTCTTTCTGGACGTCTAATTTTTGCTTTTTGATGTGTTTCATTCCATGGCATAATAAAACTTATACTTTGAATTACAAAGGACTCAATGTCAGTTTCTGGAGTGCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00043	61940	68220	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function

GO:0004222 metalloendopeptidase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000043s00003768.1	PF00004.24	AAA	460	592	9.30E-41
Glyur000043s00003768.1	PF01434.13	Peptidase_M41	672	846	4.00E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.234
SRR1783600	control	17.710
SRR1783602	moderate drought stress	17.292
SRR1811619	moderate drought stress	17.272

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.974
DRR006520	Root Summer glycyrrhizin high producing strain	23.203
DRR006521	Root Winter glycyrrhizin high producing strain	8.346
DRR006522	Root Winter glycyrrhizin high producing strain	8.082
DRR006523	Root Summer glycyrrhizin low producing strain	15.379
DRR006524	Root Summer glycyrrhizin low producing strain	14.709
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.864
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.171

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.130
SRR2868004	Drought Stress (root)	27.532
SRR2967015	Control (root)	27.260

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.397
SRR9715740	Leaf	20.512
SRR9715741	Leaf	18.449
SRR9715739	Root	3.911
SRR9715742	Root	21.603
SRR9715743	Root	16.437

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.713
SRR8749028	MeJA induced 9h	17.355
SRR8749029	MeJA induced 9h	6.577
SRR8749030	Uninduced	8.295
SRR8749031	Uninduced	2.194
SRR8749032	Uninduced	2.895

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.055
SRR8400027	Control - Root	37.894