Gene detail

Gene detail information of Glyur000043s00003766

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G52150.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
NR	XP_004486776.1	PREDICTED: homeobox-leucine zipper protein ATHB-15-like [Cicer arietinum]
Swissprot	tr\|Q9ZU11\|ATB15_ARATH	Homeobox-leucine zipper protein ATHB-15
trEMBL	tr\|V7BZT0\|V7BZT0_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW22608.1}

Sequence

Transcript Sequence

>Glyur000043s00003766.1
AAGAACCAATAGAAAACAATCACAGGGTCACAACAGCACAGAGAGCAAATATGAGAAAACCCATGGAACCGAGAATTTGCGGAACCAACCAACAACACCACACCACCACCTTACATAACAAAAAGCAAAAGCCTGAACGAGCTCCAGTGNCTCTTTCTCTTTCAGCTTAGGGTTTCCTCCTCTCCTTTTTCTTTTCTTTTTTTCCCTGTTTAATTCCCAAAGCAAAAAAGAGCCCAAAAAAATAAAAATAAAAAAATGACAGAAAAGAAGTGTTGTTAACCATCACAGTTCATTTCACTGTGCCAGAGATTCCCCCACCACCAGCTACTACCCCTAAAAAAAAAAAAATTCCTTGATCTCTGCCCTTCCTACATCTCCAGTTTCGCTCTCTCAGTGGTTTTTATTTGATGGCATGGAAAGCATGGTCCATAGATCAGCGNGAATTCAAATAGATTAGCAGAAGGATGGAGATCGGTGGAACGGTGTCGTTTTGGCTTGGCCTGAGTAGTCCAGGAGGGACGACAAGTTCACAANAAGGTTCAGGGGATGCTCTGTTCGGACTTCTGAGGATTTGAAATCGGGTGCAAAATATTTCTGGGTGTTTAAAAAAGTTTACTTTTTCGGTTGTGTTTGTTTTCTTTAGGAAATTGTTAATCTAGGTTGTAGAGGATATTTGTGGGAACTGGGAAGCAGATCGTTGGTGTTGTTAGCATGAGGTTGCTCCCAAGGCTCTGATCTCGAAGGATTTTTNCGTTTTCTCGTGCTCGTGGCTGTCCCTTGTTGAGGAAACAAAGGTAGACTGCGTGCCAGTTCAGGAAAAACACANCTCTGTCAATGCGTGCTCTTAAAAGGAAACTTGATTGAAGGAGGAGATACTCTGTGCCTCTGTGGTGGTTGTTTGGGGTTGTTGGGTGAAGTGGGGTTTGAATTGTGAAGTGAAGTGTAGTTAGGGATAATAAAGGGTATAGCAGAATGTCCTGCAAGGATGGTAAAGCGGGGTTGGACAACGGGAAATATGTCCGTTACACGCCTGAGCAGGTTGAAGCCCTTGAGAGGCTTTATCATGACTGCCCCAAACCCAGTTCCATTCGCCGCCAGCAGCTCATTCGTGAGTGCCCTATCCTCTCCAACATTGAGCCCAAGCAAATCAAGGTTTGGTTCCAGAACAGAAGATGTAGGGAGAAGCAGAGAAAAGAGGCCTCCCGGCTGCAAGCTGTAAATAGGAAGCTGACGGCTATGAACAAGCTTCTGATGGAGGAGAATGACAGGTTGCAGAAACAGGTGTCTCAATTGGTGTATGAAAATGGCTACTTCCGTCAACATACCCAAAATACTACTCTTGCAACCAAAGATGCTAGCTGTGAATCGGCGGTGACAAGTGGTCAACGCAGTTTGACAACCCAGCATCCCCCAAGGGATGCTAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCTATTGGAATTGTTGCAATTTCTCATGGTTGCCCTGGTGTGGCAGCAAGAGCATGTGGCCTAGTGGGCCTAGAACCAACAAGGGTTGCAGAAATCCTTAAAGATCGACCGTCATGGTATCGTGATTGCCGAGCGGTTGATGTTCTGAATGTGCTCCCCACAGCAAATGGTGGAACCATAGAGCTGCTTTATATGCAGCTATATGCGCCAACCACATTGGCACCTGCTCGAGACTTCTGGTTGTTGCGCTACACATCTGTTTTAGAAGATGGAAGCCTAGTGATCTGTGAGAGGTCTCTTAAGAATACACAAAATGGTCCAAGCATGCCTCCTGTGCAGCATTTTGTTAGAGCNGAGATGCTGCCCAGTGGGTACCTGATAAGACCCTGTGAAGGAGGTGGTTCCATCATCCACATTGTNGATCATATGGATTTGGAGCCATGGAGTGTTCCTGAAGTACTGCGTCCACTGTANGAATCATCAACAATGTTGGCTCAGAAGACAACAATGGTGGCCCTACGTCACCTAAGGCAGATTTCACATGAAGTTTCTCAGTCTAATGTTACTGGGTGGGGTAGACGACCAGCAGCTCTTCGAGCACTTGGGCAGAGACTGAGCCAGGGTTTCAACGAGGCACTCAATGGGTTTACTGATGAGGGATGGTCATTGATTGGCAATGATGGTGTTGATGATGTTACAATTCTAGTGAATTCATCACCTGAAAAATTAATGGGTCTGAATCTTTCCTTCNCCAATGGATTTCCATCTGTGAGTAATGCAGTCTTATGTGCCAAAGCTTCAATGCTATTACAAAATGTGCCTCCAGCCATTCTATTAAGGTTCCTGCGGGAGCATAGATCAGAATGGGCAGACAACAACATGGATGCTTACTCAGCTGCTGCCATTAAAGTTGGTCCTTGTAGTTTATCAGGCTCTCGAGTTGGAAATTATGGGGGTCAAGTTATTCTTCCTCTAGCACACACTATTGAGTATGAGGAGTTTCTGGAAGTCATTAAATTGGAAGGAATTGCTCATTCTCCTGAAGACACAATAATGCCCAGAGAAGTATTTCTTTTACAACTCTGCAGTGGAATGGATGAGAATGCTGTTGGCACCTCTGCTGAACTTATATTTGCTCCAATTGATGCATCCTTTGCTGATGATGCCCCCCTTCTGCCTTCTGGATTTCGCATCATTCCTCTTGATTCTGGNAAGGAAGTCCCCAACCCAAATCGCACCCTTGACCTGGCATCTGCCCTTGACATTGGCCCCACTGGAAACAGAGCTTCAAGTGATTATTCTGGAAATTCTGGCAGTATGAGATCAGTGATGACAATAGCATTTGAATTTGCTTTTGAAAGTCATATGCAAGAGCATGTAGCATCTATGGCACGGCAATATGTTCGCAGCATTATATCATCTGTCCAAAGGGTGGCATTAGCACTTTCACCTTCTCATCTGAGTTCACAAGCTGGGCTTAGGACACCATTGGGTACTCCTGAGGCACAAACACTTGCTCGTTGGATCTGCAACAGTTACAGGTGCTACTTGGGTGTTGAACTACTTAAATCTATTACCGAGGGGAACGAATCTTTACTCAAGTCCTTGTGGCATCACTCAGATGCAATATTGTGCTGTACTCTAAAGGCATTGCCGGTGTTCACTTTCGCAAACCAGGCAGGGCTCGACATGCTGGAGACTACATTGGTTGCTCTACAAGACATAACATTAGAGAAAATATTTGATGACCATGGCCGAAAGATTCTGTGCTCTGAGTTTCCCCAAATTATTCAACAGGGTTTCGCATGCCTTCAAGGTGGTCTTTGTCTCTCAAGCATGGGGCGACCTATTTCCTATGAAAGAGTGGTGGCTTGGAAGGTGCTGAATGAAGAAGAGAATGCTCATTGTATTTGCTTTATGTTTATGAACTGGTCTTTTGTTTGACGTCGTATGATCGGAGAATAGGAATCTAAGTGTTATAAAACGAATCACTCTTTTCAAGACATGTTTGGTTGGTTGGTGTTTTACTTTATTTGCTGCAAAGACTTGGATTGCATGTAACTCTTATGTATTAGCCTATGTTACTTGTGTTTCCTTATAATTCGGTCCCGTGTTTATTTTTGGTTNTTCTTACCCAAGTTTTTTGCACCTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00043	42804	49950	-

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0008289 lipid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000043s00003766.1	PF00046.24	Homeobox	14	72	6.40E-16
Glyur000043s00003766.1	PF01852.14	START	158	366	3.70E-52
Glyur000043s00003766.1	PF08670.6	MEKHLA	688	835	2.80E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.037
SRR1783600	control	21.236
SRR1783602	moderate drought stress	33.543
SRR1811619	moderate drought stress	33.006

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	53.234
DRR006520	Root Summer glycyrrhizin high producing strain	52.594
DRR006521	Root Winter glycyrrhizin high producing strain	43.895
DRR006522	Root Winter glycyrrhizin high producing strain	43.091
DRR006523	Root Summer glycyrrhizin low producing strain	40.939
DRR006524	Root Summer glycyrrhizin low producing strain	41.335
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.515
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.348

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	49.187
SRR2868004	Drought Stress (root)	56.847
SRR2967015	Control (root)	66.481

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.242
SRR9715740	Leaf	8.644
SRR9715741	Leaf	10.076
SRR9715739	Root	11.884
SRR9715742	Root	48.945
SRR9715743	Root	40.105

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.713
SRR8749028	MeJA induced 9h	24.347
SRR8749029	MeJA induced 9h	24.034
SRR8749030	Uninduced	14.334
SRR8749031	Uninduced	12.785
SRR8749032	Uninduced	16.717

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	60.101
SRR8400027	Control - Root	64.069