Gene detail information of Glyur000043s00003760 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G59870.1 | 1.00E-124 | ABC-2 and Plant PDR ABC-type transporter family protein |
| NR | KHN32645.1 | 0 | ABC transporter G family member 36 [Glycine soja] |
| COG | YP_723891.1 | 7.00E-09 | FHA domain-containing protein [Trichodesmium erythraeum IMS101] |
| Swissprot | tr|Q7PC86|AB35G_ARATH | 1.00E-151 | ABC transporter G family member 35 |
| trEMBL | tr|K7M3S0|K7M3S0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G43140.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00043 | 4741 | 17035 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000043s00003760.1 | PF14510.1 | ABC_trans_N | 85 | 164 | 1.30E-17 |
| Glyur000043s00003760.1 | PF00005.22 | ABC_tran | 186 | 353 | 4.00E-14 |
| Glyur000043s00003760.1 | PF01061.19 | ABC2_membrane | 351 | 417 | 1.20E-14 |
| Glyur000043s00003760.1 | PF08370.6 | PDR_assoc | 423 | 487 | 1.00E-24 |
| Glyur000043s00003760.1 | PF00005.22 | ABC_tran | 540 | 637 | 1.90E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.899 |
| SRR1783600 | control | 6.280 |
| SRR1783602 | moderate drought stress | 6.407 |
| SRR1811619 | moderate drought stress | 6.633 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.664 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.575 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.233 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.297 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.463 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.535 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.124 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.154 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 110.069 |
| SRR2868004 | Drought Stress (root) | 225.945 |
| SRR2967015 | Control (root) | 195.433 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.258 |
| SRR9715740 | Leaf | 0.181 |
| SRR9715741 | Leaf | 0.798 |
| SRR9715739 | Root | 3.849 |
| SRR9715742 | Root | 18.450 |
| SRR9715743 | Root | 16.248 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.700 |
| SRR8749028 | MeJA induced 9h | 40.739 |
| SRR8749029 | MeJA induced 9h | 9.315 |
| SRR8749030 | Uninduced | 17.626 |
| SRR8749031 | Uninduced | 14.868 |
| SRR8749032 | Uninduced | 6.789 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 100.427 |
| SRR8400027 | Control - Root | 65.288 |