Gene detail information of Glyur000042s00005121 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G66870.1 | 4.00E-54 | ASYMMETRIC LEAVES 2-like 1 |
| NR | XP_004511963.1 | 4.51E-141 | PREDICTED: LOB domain-containing protein 36-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9FKZ3|LBD36_ARATH | 2.00E-73 | LOB domain-containing protein 36 |
| trEMBL | tr|K7LN93|K7LN93_SOYBN | 5.00E-141 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G06210.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00042 | 487031 | 487954 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000042s00005121.1 | PF03195.9 | DUF260 | 8 | 107 | 6.60E-41 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.342 |
| SRR1783600 | control | 0.485 |
| SRR1783602 | moderate drought stress | 0.604 |
| SRR1811619 | moderate drought stress | 0.753 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.235 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.231 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.640 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.655 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.720 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.998 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.100 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.121 |
| SRR2868004 | Drought Stress (root) | 12.273 |
| SRR2967015 | Control (root) | 6.947 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.910 |
| SRR9715740 | Leaf | 0.206 |
| SRR9715741 | Leaf | 0.470 |
| SRR9715739 | Root | 0.708 |
| SRR9715742 | Root | 1.822 |
| SRR9715743 | Root | 1.125 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 99.241 |
| SRR8749028 | MeJA induced 9h | 125.028 |
| SRR8749029 | MeJA induced 9h | 129.696 |
| SRR8749030 | Uninduced | 62.748 |
| SRR8749031 | Uninduced | 49.859 |
| SRR8749032 | Uninduced | 123.831 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.189 |
| SRR8400027 | Control - Root | 3.401 |