Gene detail

Gene detail information of Glyur000042s00005118.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G19080.1	7.00E-63	SWIB complex BAF60b domain-containing protein
NR	XP_003517282.1	0	PREDICTED: upstream activation factor subunit spp27-like isoform 1 [Glycine max]
COG	YP_003708755.1	1.00E-17	hypothetical protein wcw_0377 [Waddlia chondrophila WSU 86-1044]
Swissprot	tr\|Q9SD34\|C3H44_ARATH	2.00E-06	Zinc finger CCCH domain-containing protein 44
trEMBL	tr\|I1J943\|I1J943_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G39030.1}

Sequence

Transcript Sequence

>Glyur000042s00005118.1
NGAGGGACCCAATTTGCACAATTGAAAATAGAGAGACTCAAATCGCACAATANCAATACATGAGGGACTAAAAGTATAATTAAACCTAAATATTTTCTGTCTCACTCATCAAAACTCAGAGCAAAGGGTAATTTCACCATAAGGAGAGGGGCAAAATGGTACAAAAACACACACACGCAAGGACATTTGGGCACGTGTGGTACTCGCTCGCAANTGCATCCTCCTTATTCCTTAACGAGAAACGAAAAACGGGCGAGCGAACAAAGTTACAATAAACAGAGAGAAAAGAGAGAAACCTTATACTACTAATTTTTATTTCCACTTGTGTCCCCGTCTGGGGCAACCTCGTCCTCCCCAAAAATCCCTCTCTTCTTCTTTCTTAGCGCCGAGACTGAGTCAAGAGGGTGAGTCACCGAACTCGTGCATTGAAAGGGGGCAAACTCGTTCCCGATGGTATCCGAATCGGAACTTATCGGCCGCCTCCGTGAGTTCCTACGGAGCTCCGACCTCAACACCACCACCACCGCCACCGTCCGCCGCCAGTTAGAGAACGATTTCGGAATCGATTTATCCGATAGGAAGGCATTCATCAGAGAACAGGTAGACTTGTTCCTTCAGAGTGAACACCAACAAGACGAAGAAGAAGAAGATGCGGTTAAACCCGAACAAAGCCAAGGTTCTGGTTCCAAGGAAGATTCCGAAGAAGAAGAAGAGGATGATAATGAGGAGGAGAAGGAAGAGAAACTGAAGCGTGCAAAGAGTGGGAAGAATAAAGGACGATCTAACAAGGTAGGCAATGAGGTAGTAAAGAAAAAAGGTGGTGGTTTTTGCAAATTATGTAGCCTGTCTCCACAGCTCCAGGAATTCATGGGAGCACCAGAGATGGCCAGGACTGAGGTTGTTAAGCAATTATGGGCCTATATTAGGGAGAAAAATTTGCAAGACCCAAACAATAGGCGAAATATCATTTGTGATGAACCACTGCGTGCCCTTTTTGGTGTTAATTCCATCAACATGTTCCAAATGAATAAAGCATTGTCAAAGCATATCTGGCCATTGGATTCAGATGATGTTGTCCAGGTGAAGTCAGCACCAAAGGAAAAGCAGAAGAAGCAAGAGAGAGAAGAGGATCCAGATGAACCGAAAAGAAAGGAAAAACGGCAGAAGGGAGGAAAATCAGGTTTTCTTGCTCCTCTTCAGCTATCTGATGCTCTCGCNAACTTCCTTGGTACTGGAGAAAGTGAGTTATCAAGAGCTGATGTCATAAAAAGAATGTGGGATTACATAAAAGGAAACAACCTTCAGGATCCTTCTGACAAGAGGAAAATATTATGTGACGAGAAGTTGAAAGAACTCTTTGATGTCGACTCCTTCAATGGCTTCACCGTTACAAAACTGCTGGCTCCTCATTTTATAAAGACAGAGCAGTGAGTTGCTTGCTTGCACATTGTTATTCGGTCAGAGCATGGGAAAAATTGGGTAATTTTGTTNATCAAATTAGTTTTTGGAAGGGTCTTATTTATGTGTCTTTTCAGCATGGTCTACCAACAGGAGGAATAGGAATTAGTATAATGACAGATTNTCAGTGAATTTTTCTCGAAGAATTTAATGTTACGTACATTACCATTTATTGTTTTTTTAACATCGTGTTTTGTCACTTGGCAGTTTAAAGTTTTGTGTATTTTTAGTTCCTGAAGCTGCAAGTATAATCTTGACTCCATATTAAACTGAGCAATTTGGCGATAGTAGGAGGAATATACTATAATATAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00042	457252	462764	+

Gene family

Gene family	subfamily
Transcription Factors Family	SWI/SNF-BAF60b

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000042s00005118.1	PF08766.6	DEK_C	3	55	2.50E-17
Glyur000042s00005118.1	PF02201.13	SWIB	127	201	1.00E-30
Glyur000042s00005118.1	PF02201.13	SWIB	247	322	2.30E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	32.102
SRR1783600	control	32.295
SRR1783602	moderate drought stress	37.181
SRR1811619	moderate drought stress	36.905

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	46.775
DRR006520	Root Summer glycyrrhizin high producing strain	46.247
DRR006521	Root Winter glycyrrhizin high producing strain	36.840
DRR006522	Root Winter glycyrrhizin high producing strain	35.640
DRR006523	Root Summer glycyrrhizin low producing strain	57.851
DRR006524	Root Summer glycyrrhizin low producing strain	56.967
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.566
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.710

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	50.653
SRR2868004	Drought Stress (root)	51.673
SRR2967015	Control (root)	53.901

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.238
SRR9715740	Leaf	33.611
SRR9715741	Leaf	37.022
SRR9715739	Root	6.741
SRR9715742	Root	24.075
SRR9715743	Root	19.603

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	66.547
SRR8749028	MeJA induced 9h	60.712
SRR8749029	MeJA induced 9h	63.233
SRR8749030	Uninduced	63.704
SRR8749031	Uninduced	69.528
SRR8749032	Uninduced	50.352

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	48.804
SRR8400027	Control - Root	43.733