Gene detail information of Glyur000042s00005115 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G23640.1 | 6.00E-28 | Reticulan like protein B13 |
| NR | XP_003611823.1 | 1.36E-102 | seed maturation protein [Medicago truncatula] |
| Swissprot | tr|O64837|RTNLM_ARATH | 2.00E-43 | Reticulon-like protein B13 |
| trEMBL | tr|G7K9D8|G7K9D8_MEDTR | 5.00E-103 | Reticulon-like protein {ECO:0000256|RuleBase:RU210713} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00042 | 447414 | 449004 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000042s00005115.1 | PF02453.12 | Reticulon | 28 | 188 | 4.60E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.861 |
| SRR1783600 | control | 16.831 |
| SRR1783602 | moderate drought stress | 15.205 |
| SRR1811619 | moderate drought stress | 15.006 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.003 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.477 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 48.133 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 47.387 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.461 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.548 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.230 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.229 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.912 |
| SRR2868004 | Drought Stress (root) | 1.063 |
| SRR2967015 | Control (root) | 1.038 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.043 |
| SRR9715740 | Leaf | 0.576 |
| SRR9715741 | Leaf | 0.622 |
| SRR9715739 | Root | 6.225 |
| SRR9715742 | Root | 6.678 |
| SRR9715743 | Root | 7.565 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.433 |
| SRR8749028 | MeJA induced 9h | 13.665 |
| SRR8749029 | MeJA induced 9h | 4.482 |
| SRR8749030 | Uninduced | 2.115 |
| SRR8749031 | Uninduced | 1.710 |
| SRR8749032 | Uninduced | 1.854 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 25.496 |
| SRR8400027 | Control - Root | 16.155 |