Gene detail information of Glyur000042s00005114 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G66920.1 | 0 | SKU5 similar 17 |
| NR | XP_003517277.1 | 0 | PREDICTED: L-ascorbate oxidase homolog [Glycine max] |
| COG | YP_003188427.1 | 6.00E-17 | multicopper oxidase/copper resistance protein CopA [Acetobacter pasteurianus IFO 3283-01] |
| Swissprot | tr|P29162|ASOL_TOBAC | 0 | L-ascorbate oxidase homolog (Precursor) |
| trEMBL | tr|I1J937|I1J937_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G38980.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00042 | 441104 | 444824 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000042s00005114.1 | PF07732.10 | Cu-oxidase_3 | 71 | 184 | 2.50E-37 |
| Glyur000042s00005114.1 | PF00394.17 | Cu-oxidase | 197 | 331 | 2.70E-37 |
| Glyur000042s00005114.1 | PF07731.9 | Cu-oxidase_2 | 413 | 568 | 6.50E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 173.714 |
| SRR1783600 | control | 173.437 |
| SRR1783602 | moderate drought stress | 46.381 |
| SRR1811619 | moderate drought stress | 46.273 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 73.002 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 71.284 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.448 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.400 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 125.429 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 124.413 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.875 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.838 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 74.043 |
| SRR2868004 | Drought Stress (root) | 29.095 |
| SRR2967015 | Control (root) | 22.219 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 28.596 |
| SRR9715740 | Leaf | 7.426 |
| SRR9715741 | Leaf | 11.819 |
| SRR9715739 | Root | 92.806 |
| SRR9715742 | Root | 117.954 |
| SRR9715743 | Root | 103.968 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 247.729 |
| SRR8749028 | MeJA induced 9h | 127.457 |
| SRR8749029 | MeJA induced 9h | 86.491 |
| SRR8749030 | Uninduced | 25.222 |
| SRR8749031 | Uninduced | 3.160 |
| SRR8749032 | Uninduced | 4.428 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 79.516 |
| SRR8400027 | Control - Root | 141.858 |