Gene detail

Gene detail information of Glyur000042s00005112

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G65590.1	3.00E-25	Dof-type zinc finger DNA-binding family protein
NR	XP_007156842.1	1.44E-115	hypothetical protein PHAVU_002G022000g [Phaseolus vulgaris]
Swissprot	tr\|Q9LSL6\|DOF57_ARATH	6.00E-33	Dof zinc finger protein DOF5.7
trEMBL	tr\|V7CIV4\|V7CIV4_PHAVU	5.00E-116	Uncharacterized protein {ECO:0000313\|EMBL:ESW28836.1}

Sequence

Transcript Sequence

>Glyur000042s00005112.1
ATGATCCAAGAGCTGTTTGGTGGTGCAGCAGGAGAAAGAAAAATCTCCAATATCAACGAAGGAGGAACAATTCTACTACCATCTCCCAATACTTGTCTCCTTTCTCCTTCTTCCACACCACAAAGCATCACCGCAACCTCCACCACCGCCGCCACCTCCACCGCGGCCACCTCAAATTCTTCAGAGAATCAGAACTTGAGGTGCCCGCGATGNGATTCACCAAACACGAAGTTCTGCTACTACAACAACTACAACCTCACTCAGCCTCGACACTTCTGCAAGACGTGTCGCCGGTACTGGACCAAAGGCGGCGCTCTCAGGAATGTCCCCATCGGAGGTGGCTGCCGTAAAAACAAGAACNCCGCCGTGTCCAACTCGGTGGCAAAGGCGGCGACCGCGACAAAGATGAAGGCAGTGGTGGCATCGGAGCTTGGAANGTCTTCAGGAATACTTGGTCAACCTTTGTTTGACCACCATGACCACCTTCCACCAACCCCAATCCTTTGGGGTTCTCCACAAAATACTCATTTATTATCTCTACTGAGAGCTGGCCAAAACCCTAACCCTAACCCTAGTCCCATGTCAATTTCTAATGCTGCTGTTAAGGAAGAAGGGAACTTATTAAGATCCCAATCTCAGTCTCACATGGTGACTAATTCTGAGCCATTGCTTGCAAATGGGGTGGTGTTGAATAATAATGTTCCTAGAACCGTAGGTTATGATGCTGTTGCTGTTGGACATGTCACTTCTTCACAGGGTCTATGCGGGTCTTTTTGGAGAAACAATAATCAAGAGATTCAGATTCAACAACAGAATAGTGGCTTTGTACAGCTTGGAGAACACCAAAGCAGTGGGATTCAAGAGTTTTACCACAGGCTCAGGTCATCTTCGGTTAATTATAATTGCAGTGATAATAACTCACCAACAACGTTTCTGGGCAACATGGCTTCTTCTTCTTCCTCTTCTTTATCCAACATGTTGGAGTCTTCTTCAGTTTCTGGGACTGATCAATTCGGATGCTGGAATCCAACCCTTAACTGGTCTGATCTTCCCACAACCAATGGTGCATATCCCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00042	435860	436936	+

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-Dof

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000042s00005112.1	PF02701.10	zf-Dof	63	121	1.00E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.040
SRR1783600	control	4.196
SRR1783602	moderate drought stress	5.579
SRR1811619	moderate drought stress	6.009

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.418
DRR006520	Root Summer glycyrrhizin high producing strain	5.293
DRR006521	Root Winter glycyrrhizin high producing strain	1.451
DRR006522	Root Winter glycyrrhizin high producing strain	1.361
DRR006523	Root Summer glycyrrhizin low producing strain	4.334
DRR006524	Root Summer glycyrrhizin low producing strain	4.055
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.342
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.196

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.630
SRR2868004	Drought Stress (root)	31.841
SRR2967015	Control (root)	35.703

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.153
SRR9715740	Leaf	0.361
SRR9715741	Leaf	0.507
SRR9715739	Root	2.405
SRR9715742	Root	6.038
SRR9715743	Root	5.241

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.067
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.771
SRR8400027	Control - Root	7.282