Gene detail

Gene detail information of Glyur000042s00005110

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G23610.1	2.00E-52	methyl esterase 3
NR	XP_003611830.1	3.63E-135	Esterase PIR7B [Medicago truncatula]
COG	YP_008147406.1	5.00E-15	hypothetical protein SCE1572_04745 [Sorangium cellulosum So0157-2]
Swissprot	tr\|O80477\|MES3_ARATH	3.00E-63	Methylesterase 3
trEMBL	tr\|G7K9E5\|G7K9E5_MEDTR	1.00E-135	Methyl jasmonate esterase {ECO:0000313\|EMBL:AES94788.1}

Sequence

Transcript Sequence

>Glyur000042s00005110.1
ATGGAGAAGGGGAGAAGAGGCACTTTGTGTTGGTTCATGGAGCTTGCCATGGGGCATGGTGTGTCAACTTTGCTGAAATCTGGTGGACACGAAGTCACAGCTCTAGACATGGCTGCTTCTGGCATCCATCCAAAGCAGGTGCAGGAGCTTAATTCTATTACAGAGTATAATGAGCCGTTGATGGAGTTTCTACGGTCTTTGCCACAAGAGGAGCGAGTAATCCTGGTGGGTCACAGCTTGGGTGGGATTTGCATATCTATGGCCATGCAAATGTTCCCCCACAAAATTGCAGTTGCGGTATTTGTTACCGCTACGATGCCTGGTCCTGACCTGTGCTATCCGACTCTCGTCGAAGAGTATAATCAAAGGTTGGATTCTAGCTTGGACACAAAGGTTGTGTTTGATAATGAAGAGAGCCCCAACAATCAGCCAAATGGATCCTTGATATTTGGGCCCCAATACTTAGTGTCCACCTTATACCATCTATCTCCACCTGAGGACTTGAGCCTTGCAATGTCACTGCTGAGACCCACTCGGCTGTATGGGGATCAAGATCTGTTACGAGAGAAAACAAATGTTACAAGAGAAAACTACGGAACAGTGGCCAAAGTGTACGTAGTGTGCGAACAAGACAAAGTGTTGAAGCATGATTTTCAACTGTCAATGATCGAACGAAATCCTACTAACGACGTCAAAGTGATTGCTGATGCTGATCACATGCCCATGTTCTCTAAACCAAAAGAGCTTTTCTCGTGCCTTCAAGACATCGCCAACGCATATTATTAATAATTAGCAACTGAATATTATGTACCCGCGCGCGCGCTGATTTGAATTTATATGTTACTCCTGAATCTGATGAAGACCGAATATCAAATAAATTCATCTTCCTTAATAAGCAATGTAGTTTTTTTTCAGGGATTTATAATGTAGATGGATGATCGAGTGGATCATCTCGTAAGTTTAATTAATTGCCTTTCTGCTTCAACATCATGTTTGATGAGTGGGAGTGGACTCAGTGGAGTATCTTCCCCATTTTGGCCTCCTTCTTATGGACTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00042	414292	424381	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000042s00005110.1	PF12697.2	Abhydrolase_6	24	249	3.40E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.804
SRR1783600	control	8.953
SRR1783602	moderate drought stress	22.307
SRR1811619	moderate drought stress	22.121

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.458
DRR006520	Root Summer glycyrrhizin high producing strain	7.288
DRR006521	Root Winter glycyrrhizin high producing strain	68.008
DRR006522	Root Winter glycyrrhizin high producing strain	65.201
DRR006523	Root Summer glycyrrhizin low producing strain	9.696
DRR006524	Root Summer glycyrrhizin low producing strain	9.990
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.830
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.321

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.038
SRR2868004	Drought Stress (root)	6.772
SRR2967015	Control (root)	9.074

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.391
SRR9715740	Leaf	4.124
SRR9715741	Leaf	1.346
SRR9715739	Root	3.833
SRR9715742	Root	3.195
SRR9715743	Root	4.461

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.486
SRR8749028	MeJA induced 9h	23.263
SRR8749029	MeJA induced 9h	9.458
SRR8749030	Uninduced	36.758
SRR8749031	Uninduced	47.562
SRR8749032	Uninduced	44.148

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.309
SRR8400027	Control - Root	18.042