Gene detail

Gene detail information of Glyur000042s00005107

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G70490.3	4.00E-93	Ras-related small GTP-binding family protein
NR	XP_003611669.1	2.51E-129	ADP-ribosylation factor [Medicago truncatula]
COG	YP_001737337.1	7.00E-37	small GTP-binding protein [Candidatus Korarchaeum cryptofilum OPF8]
Swissprot	tr\|Q06396\|ARF1_ORYSJ	2.00E-118	ADP-ribosylation factor 1
trEMBL	tr\|G7K590\|G7K590_MEDTR	9.00E-130	Uncharacterized protein {ECO:0000313\|EMBL:AFK41100.1}

Sequence

Transcript Sequence

>Glyur000042s00005107.1
CGCTGCCCTAACTTTTGTACTGTGCCATTCGAATCTCACGTATGGGATAGGGAAATTCATATTACTTTATCTGCACNACTTGCGTTTGAATCTTAACCAATGTTCTTTTCAATACCATGGCATCAAATTTCATGCCCATCATTTATAGTCCCAAATGGCCTCAACCGTAAGTTAAATAATGCCACAACAACAGCACCCATTATTCTTCATCAATCAATCTATATNCGAATCTTATTCTCGCTTTCTCTTGTTGCAGCATTGATGCCTGGTGCTATTTTCTGGTCTCATGTTTATTATAATACACACAAACAAACAACTCATTAAATTTTGCCTTTCTTCGACTTCTCTAGAAAATTAATTTTTTTGAGGTTGATCTTTCGGCTAAGTTTTGCTTGAACCAGAGGCAACAATGGGTTTGACGGTGTCACGGTTAATGAGATTATTTTATGCAAAGAAAGAAATGAGGATTCTGATGGTGGGTCTCGATGCAGCTGGGAAAACAACAATACTCTACAAACTGAAGCTTGGAGAAATCGTCACTACCATACCCACCATAGGCTTCAATGTGGAAACTGTTGAGTACAAAAATGTCAGCTTCACTGTCTGGGATGTGGGAGGACAGGACAAGATTCGACCATTGTGGAGACACTACTTTCAGAATACACAAGGTCTTATCTTTGTGGTAGATAGTAACGATAGAGAAAGGATTTTAGAAGCCAGAGATGAGCTCCACAGAATGCTGAGTGAGGATGAACTTCGTGATGCCACCTTACTGGTATTTGCCAATAAGCAAGACCTTCCAAATGCTTTGAGTGTTTCAGAAATCACAGATAAACTTGGTTTACATTCACTTCGTCAGCGTCGTTGGTACATCCAGGCAACTTGTGCCACATCTGGCCAAGGACTCTATGAAGGACTTGATTGGTTATCCAGTAACATATCTGGCAAGATAAGATGAACCAAGCTCACATGAGTACCTTTTATTGTATGAATACTGAGACTTGTCTGCACCTTCTATCATATGTATGACATCTAGTTTGCTTATAGTTATAGGCATAATCCAGAGTGTTTCCTGTGGTTTTGAACTTTGAACCAACTATGATATCAAATTATCAATCACTCTGTACCCTTTCTAAACGTTCAGGGCATGTAAGTATTGCAATTTGCACTCCTGAGGAGTATTAGTACAACCCATTGCCGTATTAAATAATATCAGTGGTGTTTGTTTATGCAGATAGCAGCAAATGTAGACTCTTCTAGTGTAAAAGCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00042	394037	395983	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0007264 small GTPase mediated signal transduction

cellular_component
GO:0005622 intracellular

molecular_function
GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000042s00005107.1	PF00025.16	Arf	8	177	3.60E-79
Glyur000042s00005107.2	PF00025.16	Arf	8	177	3.60E-79

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.426
SRR1783600	control	10.277
SRR1783602	moderate drought stress	14.156
SRR1811619	moderate drought stress	14.079

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.558
DRR006520	Root Summer glycyrrhizin high producing strain	27.346
DRR006521	Root Winter glycyrrhizin high producing strain	7.154
DRR006522	Root Winter glycyrrhizin high producing strain	6.691
DRR006523	Root Summer glycyrrhizin low producing strain	51.556
DRR006524	Root Summer glycyrrhizin low producing strain	51.331
DRR006525	Leaf Summer glycyrrhizin high producing strain	39.557
DRR006526	Leaf Summer glycyrrhizin high producing strain	39.330

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.031
SRR2868004	Drought Stress (root)	25.392
SRR2967015	Control (root)	27.488

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.282
SRR9715740	Leaf	38.153
SRR9715741	Leaf	28.915
SRR9715739	Root	5.464
SRR9715742	Root	23.455
SRR9715743	Root	21.668

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.028
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.064
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.041

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.338
SRR8400027	Control - Root	14.921