Gene detail information of Glyur000042s00005105 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G67270.1 | 5.00E-123 | end binding protein 1C |
| NR | XP_003517319.1 | 0 | PREDICTED: microtubule-associated protein RP/EB family member 1C-like [Glycine max] |
| Swissprot | tr|Q9FGQ6|EB1C_ARATH | 3.00E-153 | Microtubule-associated protein RP/EB family member 1C |
| trEMBL | tr|I1J9A7|I1J9A7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G39720.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00042 | 390857 | 392805 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000042s00005105.1 | PF00307.26 | CH | 18 | 114 | 3.50E-10 |
| Glyur000042s00005105.1 | PF03271.12 | EB1 | 205 | 244 | 1.20E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.736 |
| SRR1783600 | control | 8.726 |
| SRR1783602 | moderate drought stress | 4.427 |
| SRR1811619 | moderate drought stress | 4.318 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.877 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.777 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.971 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.201 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.774 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.868 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 32.973 |
| SRR2868004 | Drought Stress (root) | 12.724 |
| SRR2967015 | Control (root) | 15.643 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.139 |
| SRR9715740 | Leaf | 0.366 |
| SRR9715741 | Leaf | 1.749 |
| SRR9715739 | Root | 2.269 |
| SRR9715742 | Root | 4.570 |
| SRR9715743 | Root | 3.709 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 61.776 |
| SRR8749028 | MeJA induced 9h | 31.835 |
| SRR8749029 | MeJA induced 9h | 29.052 |
| SRR8749030 | Uninduced | 0.295 |
| SRR8749031 | Uninduced | 0.379 |
| SRR8749032 | Uninduced | 2.482 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.546 |
| SRR8400027 | Control - Root | 17.677 |