Gene detail information of Glyur000042s00005095 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G14960.1 | 0 | Auxin-responsive GH3 family protein |
| NR | XP_003611653.1 | 0 | Indole-3-acetic acid-amido synthetase GH3.3 [Medicago truncatula] |
| COG | YP_003444757.1 | 6.00E-24 | alpha-L-glutamate ligase [Allochromatium vinosum DSM 180] |
| Swissprot | tr|O82333|GH31_ARATH | 0 | Probable indole-3-acetic acid-amido synthetase GH3.1 |
| trEMBL | tr|G7K574|G7K574_MEDTR | 0 | Indole-3-acetic acid-amido synthetase {ECO:0000313|EMBL:AES94611.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00042 | 322367 | 324437 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000042s00005095.1 | PF03321.8 | GH3 | 20 | 576 | 2.60E-197 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.010 |
| SRR1783600 | control | 1.061 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.594 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.593 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.182 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.154 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.382 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.408 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.102 |
| SRR2868004 | Drought Stress (root) | 18.655 |
| SRR2967015 | Control (root) | 30.747 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.871 |
| SRR9715740 | Leaf | 0.070 |
| SRR9715741 | Leaf | 0.353 |
| SRR9715739 | Root | 0.123 |
| SRR9715742 | Root | 0.939 |
| SRR9715743 | Root | 0.842 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 35.960 |
| SRR8749028 | MeJA induced 9h | 138.949 |
| SRR8749029 | MeJA induced 9h | 48.206 |
| SRR8749030 | Uninduced | 227.807 |
| SRR8749031 | Uninduced | 96.447 |
| SRR8749032 | Uninduced | 51.249 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.021 |
| SRR8400027 | Control - Root | 4.616 |