Gene detail information of Glyur000042s00005089 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | KDP32032.1 | 7.56E-44 | hypothetical protein JCGZ_12493 [Jatropha curcas] |
| Swissprot | tr|O22194|AGP17_ARATH | 2.00E-14 | Lysine-rich arabinogalactan protein 17 (Precursor) |
| trEMBL | tr|A0A067K7D4|A0A067K7D4_JATCU | 3.00E-44 | Uncharacterized protein {ECO:0000313|EMBL:KDP32032.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00042 | 295825 | 297518 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 315.400 |
| SRR1783600 | control | 316.958 |
| SRR1783602 | moderate drought stress | 109.313 |
| SRR1811619 | moderate drought stress | 108.024 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 162.777 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 161.507 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.149 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.031 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 139.101 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 138.309 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 54.681 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 54.041 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 339.404 |
| SRR2868004 | Drought Stress (root) | 161.606 |
| SRR2967015 | Control (root) | 155.991 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 52.061 |
| SRR9715740 | Leaf | 13.452 |
| SRR9715741 | Leaf | 16.348 |
| SRR9715739 | Root | 397.356 |
| SRR9715742 | Root | 285.472 |
| SRR9715743 | Root | 270.436 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 103.030 |
| SRR8749028 | MeJA induced 9h | 71.611 |
| SRR8749029 | MeJA induced 9h | 75.037 |
| SRR8749030 | Uninduced | 12.255 |
| SRR8749031 | Uninduced | 2.795 |
| SRR8749032 | Uninduced | 10.985 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 196.230 |
| SRR8400027 | Control - Root | 285.687 |