Gene detail information of Glyur000042s00005088 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G43120.1 | 2.00E-129 | ARM-repeat/Tetratricopeptide repeat (TPR)-like protein |
| NR | XP_003538799.1 | 0 | PREDICTED: uncharacterized protein LOC100803448 [Glycine max] |
| trEMBL | tr|K7LN54|K7LN54_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G05460.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00042 | 288509 | 290353 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000042s00005088.1 | PF13414.1 | TPR_11 | 418 | 487 | 8.90E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.370 |
| SRR1783600 | control | 2.332 |
| SRR1783602 | moderate drought stress | 2.516 |
| SRR1811619 | moderate drought stress | 2.460 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.085 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.123 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.284 |
| SRR2868004 | Drought Stress (root) | 9.002 |
| SRR2967015 | Control (root) | 8.387 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.266 |
| SRR9715742 | Root | 0.533 |
| SRR9715743 | Root | 0.564 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.001 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.996 |
| SRR8400027 | Control - Root | 5.169 |