Gene detail

Gene detail information of Glyur000042s00005085

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37470.1	1.00E-127	alpha/beta-Hydrolases superfamily protein
NR	ACJ85126.1	0	unknown [Medicago truncatula]
COG	YP_007142317.1	9.00E-78	alpha/beta fold family hydrolase [Crinalium epipsammum PCC 9333]
Swissprot	tr\|Q9SZU7\|KAI2_ARATH	5.00E-161	Probable esterase KAI2
trEMBL	tr\|B7FK41\|B7FK41_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK46148.1}

Sequence

Transcript Sequence

>Glyur000042s00005085.1
GTTTTATACGCTTGACAAAAAAAATCAAGGTAACAACAAAGAATCCTCTTTTTTGTGACCAATGAGATTGCATTATTTCTCCATCGGTTGAGATTTTTGTGGCACTACTTGTTCCCCGTGGCCTTTTAAGTCCAAATATAACGGCGTGGCCTGAAAGTCACGCTTTCAGTTTCACACAGCCGGTGATTAAGCAAAGTAAAGGTAGAGAGGGAAGAGGAAAATTGAGTGACAGAATGGGGATAGTGGAGGAAGCTCACAACGTGAAAGTTCTAGGATCAGGCAATAGGTTCATAGTTCTGGCTCACGGATTCGGCACGGACCAGTCCGTGTGGAAACACTTCGTACCTTATCTCATCGACGACTTTCGTGTTGTTCTCTACGACAACATGGGCGCGGGTACAACTAACCCTGACTACTTCGATTCTGAGCGCCACTCAAGCTTAGAAGGCTATGCGTACGACTTGCTCGCCATTTTAGAAGAGCTCCAAATTGATTCCTGCATATTCGTTGGCCACTCTGTTTCCGCTATGATCGGTGCTATTGCTTCCATTTCACGCCCCGATCTCTTCTCTAAGCTCATCATGGTCTCTGCTTCCCCAAGGTATTTGAACGGCGTGAATTACTTTGGCGGGTTTGAGCAGGAAGATCTGAACCAATTATTCGACGCTATGGCGGCGAATTACAAAGCGTGGTGCTTTGGGTTTGCTCCACTGGCGGTGGGTGGGGACATGGAGTCGGTGGCGGTGCAGGAGTTTAGTCGAACCTTGTTCAACATGAGGCCAGACATAGCGCTAATAGTGTCGAGGACCATTTTTCAGAGCGACATGAGGCAGATTTTGAGCCTTGTCACTGTCCCGTGCCATATTATACAGGCTCAGAAGGATATGGCGGTTCCGGTGGTGGTTTCAGAGTACCTCCACCAAAACCTCGGCGGTGACTCCATCGTGGAGGTCATGCCAACCGATGGTCATTTGCCACAATTAAGCTCGCCGGATATCGTTATTCCGGTGCTGCTCAAGCACATTCAACTTGAGATTGAGCCGACAAGGTAATTAATGATGTTGCTCCATTATTGTTGGCTGAAAGAGAGAGTCACTGTTTTATTTGTCGTATGAAGGAGCAAGGGAAAATGGTGGGAATCGTTTCCATTCAATTGTGTGTTTCTGTTTGTTGCTTGCGATTTAGTTATGGTAGAGGAAGCAAGACTCTGTGGCAGTGCATGGAAATCAAATGTCAGTNTCCTGTGGGGATGTATAAATTTATTTTCTCACCTAATTCGAGTATTATGGAATGAAGTTACCCATTATATTCATTGTGTTGTGAGGTTTTAACTTTTTAGTTTAGTGTAGCTGGGGAGGAAACATGGTACCATGAAGCACACTAAAAGCAGTAGTTTTCTTAAAGAGAAAGTACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00042	265839	267438	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000042s00005085.1	PF12697.2	Abhydrolase_6	20	256	4.20E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.491
SRR1783600	control	0.493
SRR1783602	moderate drought stress	0.564
SRR1811619	moderate drought stress	0.563

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.224
DRR006520	Root Summer glycyrrhizin high producing strain	2.124
DRR006521	Root Winter glycyrrhizin high producing strain	4.025
DRR006522	Root Winter glycyrrhizin high producing strain	3.848
DRR006523	Root Summer glycyrrhizin low producing strain	1.871
DRR006524	Root Summer glycyrrhizin low producing strain	1.872
DRR006525	Leaf Summer glycyrrhizin high producing strain	63.794
DRR006526	Leaf Summer glycyrrhizin high producing strain	63.494

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.269
SRR2868004	Drought Stress (root)	2.363
SRR2967015	Control (root)	2.586

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	61.583
SRR9715740	Leaf	106.421
SRR9715741	Leaf	60.731
SRR9715739	Root	1.772
SRR9715742	Root	3.580
SRR9715743	Root	2.425

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.251
SRR8749028	MeJA induced 9h	0.286
SRR8749029	MeJA induced 9h	0.301
SRR8749030	Uninduced	0.090
SRR8749031	Uninduced	0.054
SRR8749032	Uninduced	0.080

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.062
SRR8400027	Control - Root	1.751