Gene detail information of Glyur000042s00005084 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G33920.1 | 5.00E-135 | Protein phosphatase 2C family protein |
| NR | XP_003538798.1 | 0 | PREDICTED: probable protein phosphatase 2C 78-like isoform X1 [Glycine max] |
| Swissprot | tr|O81760|P2C63_ARATH | 0 | Probable protein phosphatase 2C 63 |
| trEMBL | tr|K7LN52|K7LN52_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G05430.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00042 | 259463 | 262814 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000042s00005084.1 | PF00481.16 | PP2C | 57 | 307 | 5.60E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.366 |
| SRR1783600 | control | 3.317 |
| SRR1783602 | moderate drought stress | 3.979 |
| SRR1811619 | moderate drought stress | 3.970 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 25.997 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.578 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.953 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.762 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 47.191 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 47.199 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.566 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.497 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.085 |
| SRR2868004 | Drought Stress (root) | 12.150 |
| SRR2967015 | Control (root) | 15.089 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 78.997 |
| SRR9715740 | Leaf | 53.523 |
| SRR9715741 | Leaf | 104.874 |
| SRR9715739 | Root | 9.570 |
| SRR9715742 | Root | 52.642 |
| SRR9715743 | Root | 48.286 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.781 |
| SRR8749028 | MeJA induced 9h | 57.425 |
| SRR8749029 | MeJA induced 9h | 59.563 |
| SRR8749030 | Uninduced | 22.349 |
| SRR8749031 | Uninduced | 11.408 |
| SRR8749032 | Uninduced | 11.389 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.207 |
| SRR8400027 | Control - Root | 13.518 |