Gene detail information of Glyur000042s00005076 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G67370.1 | 9.00E-109 | Protein of unknown function (DUF1230) |
| NR | XP_007156740.1 | 0 | hypothetical protein PHAVU_002G013300g [Phaseolus vulgaris] |
| Swissprot | tr|P51273|YCF36_PORPU | 2.00E-36 | Uncharacterized protein ycf36 |
| trEMBL | tr|V7CF30|V7CF30_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW28734.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00042 | 233431 | 237924 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000042s00005076.1 | PF06799.6 | DUF1230 | 71 | 213 | 1.00E-53 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.220 |
| SRR1783600 | control | 5.069 |
| SRR1783602 | moderate drought stress | 6.519 |
| SRR1811619 | moderate drought stress | 6.227 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.735 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.849 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.590 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.278 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.013 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.853 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 50.362 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 49.922 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.506 |
| SRR2868004 | Drought Stress (root) | 7.293 |
| SRR2967015 | Control (root) | 6.286 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 46.755 |
| SRR9715740 | Leaf | 80.732 |
| SRR9715741 | Leaf | 45.918 |
| SRR9715739 | Root | 0.360 |
| SRR9715742 | Root | 3.062 |
| SRR9715743 | Root | 2.171 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.476 |
| SRR8749028 | MeJA induced 9h | 2.669 |
| SRR8749029 | MeJA induced 9h | 2.669 |
| SRR8749030 | Uninduced | 5.470 |
| SRR8749031 | Uninduced | 4.452 |
| SRR8749032 | Uninduced | 3.275 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.178 |
| SRR8400027 | Control - Root | 8.005 |