Gene detail

Gene detail information of Glyur000042s00005075.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G33910.1	4.00E-99	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	AFK49598.1	2.33E-176	unknown [Lotus japonicus]
COG	YP_004686973.1	6.00E-35	prolyl 4-hydroxylase alpha subunit [Cupriavidus necator N-1]
Swissprot	tr\|Q8VZJ7\|P4H9_ARATH	2.00E-135	Probable prolyl 4-hydroxylase 9 (Precursor)
trEMBL	tr\|I3TAQ6\|I3TAQ6_LOTJA	9.00E-177	Uncharacterized protein {ECO:0000313\|EMBL:AFK49598.1}

Sequence

Transcript Sequence

>Glyur000042s00005075.1
ATTAATTGCGGTCAATGACCATATTGGGTATGCAAGTTCAAATAAGCGGGCGCACACAGAGTGAACCACCAGGAAATCCGTTAGAAAACGCCAGTCCTCAGAGAGAAGTGGCATAGTCAGCTTCTCAAGTTTTCAGAGTTCATTTGTAGTCAGTTTAGCATTTGATTTGAGGAAGGAAAAAAAAAAACCGAAGAACTCTCTGAACGATCCAAAATGAAAGCCAAAACGGTTAAAGGAAATTGGAGCTGGAGGACGAAGAAGGTCGGCTTGCCTTCTGTTTTCCTCATATGCATCTTCTTCTTTCTCGCTGGATTCTTCGGTTCCAGTCTCTTCTCTCACTCTCAGGAAGATGAAAATGGTTTGAGGCTGATGCCGAGACCGAGGGCGAGGTTGCTTGAAAAATCAATGGAGGAGACGGAGTACCGTTTGTTGCATGCCGGAGATTCCGGTGACAATTTCATTACATCGATTCCTTTCCAGGTTTTGAGCTGGAACCCTCGCGCTCTATATTTTCCTAATTTTGCAAGTGCAGAGCAATGTGAAAGCATAATTGACATGGCAAGGGGAGGACTCAAACCATCAACAGTGGCATTGCGCAAGGGAGAAACGGAGGAGAATACAAAGGGAATCAGAACAAGCTCTGGTGTGTTTATTAGTGCTTCTGAGGATAAAACGGGGATTTTAGATGTCATTGAGGAGAAAATTGCCAAAGCAACAAAAATTCCCAGGACTCATGGAGAGGCATTTAATATCCTCCGCTATAAGGTCGGACAGAGATATAATTCTCATTATGATGCATTCAATCCTGCTGAATATGGCCCACAAAAGAGCCAAAGGATGGCTTCATTTTTGCTGTATTTAACNGATGTTTCGGAAGGTGGGGAGACCATGTTTCCGTTTGAGAATGGATTGAACATGGACGGTAGCTATGATTTTGAGGGCTGTATTGGTTTAAGAGTAAAGCCACGCAAGGGGGATGGACTTCTATTTTATTCGTTGTTCCCTAATGGTACAATTGATCCGATGTCACTCCACGGGAGCTGCNCAGTAGTAAAAGGGGAGAAGTGGGTAGCTACAAAGTGGATAAGGGATCGAGCGTGGGATGATTAGATGAATGGATTGGTACCTGCAATTGGGATTCAAATTCTTACAGAGTAGTATTTATGTCACTTTAGTAGAGTCGTTAGGATTTTTTTTATGGTTTAGATGAATAATCAGAGCTAAAAGCTGATTAAACGCTGAAATTGTAAAGCAAAACCGCACATTAATATCATGCACCATGCATGTTACACCATGCATTAATTTAACGAAACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00042	225493	232008	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00472	P4HA	EC:1.14.11.2	Arginine and proline metabolism	map00330

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016491 oxidoreductase activity

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

GO:0031418 L-ascorbic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000042s00005075.1	PF03171.15	2OG-FeII_Oxy	176	292	1.80E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.658
SRR1783600	control	1.688
SRR1783602	moderate drought stress	1.420
SRR1811619	moderate drought stress	1.300

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.023
DRR006520	Root Summer glycyrrhizin high producing strain	3.618
DRR006521	Root Winter glycyrrhizin high producing strain	22.066
DRR006522	Root Winter glycyrrhizin high producing strain	21.755
DRR006523	Root Summer glycyrrhizin low producing strain	11.504
DRR006524	Root Summer glycyrrhizin low producing strain	11.249
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.066
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.953

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.070
SRR2868004	Drought Stress (root)	5.739
SRR2967015	Control (root)	4.558

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.894
SRR9715740	Leaf	11.874
SRR9715741	Leaf	12.393
SRR9715739	Root	1.209
SRR9715742	Root	1.349
SRR9715743	Root	1.690

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	53.553
SRR8749028	MeJA induced 9h	79.000
SRR8749029	MeJA induced 9h	116.670
SRR8749030	Uninduced	89.803
SRR8749031	Uninduced	96.762
SRR8749032	Uninduced	67.320

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.268
SRR8400027	Control - Root	5.138