Gene detail information of Glyur000042s00005073 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G24230.1 | 3.00E-25 | acyl-CoA-binding domain 3 |
| NR | XP_003517332.1 | 2.99E-88 | PREDICTED: acyl-CoA-binding domain-containing protein 3-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9STX1|ACBP3_ARATH | 3.00E-29 | Acyl-CoA-binding domain-containing protein 3 (Precursor) |
| trEMBL | tr|I1J9C7|I1J9C7_SOYBN | 1.00E-88 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G39920.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00042 | 214584 | 215913 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000042s00005073.1 | PF00887.14 | ACBP | 161 | 241 | 2.30E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.336 |
| SRR1783600 | control | 0.314 |
| SRR1783602 | moderate drought stress | 0.233 |
| SRR1811619 | moderate drought stress | 0.334 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.014 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.835 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.254 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.268 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.224 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.371 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.265 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.202 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.873 |
| SRR2868004 | Drought Stress (root) | 5.049 |
| SRR2967015 | Control (root) | 7.924 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.713 |
| SRR9715740 | Leaf | 6.770 |
| SRR9715741 | Leaf | 8.822 |
| SRR9715739 | Root | 0.482 |
| SRR9715742 | Root | 4.061 |
| SRR9715743 | Root | 2.948 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.298 |
| SRR8749028 | MeJA induced 9h | 0.728 |
| SRR8749029 | MeJA induced 9h | 0.292 |
| SRR8749030 | Uninduced | 0.705 |
| SRR8749031 | Uninduced | 0.477 |
| SRR8749032 | Uninduced | 0.212 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.268 |
| SRR8400027 | Control - Root | 2.966 |