Gene detail

Gene detail information of Glyur000042s00005071

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37510.1	0	Ribonuclease III family protein
NR	XP_004511863.1	0	PREDICTED: uncharacterized protein LOC101500174 [Cicer arietinum]
COG	YP_007423233.1	5.00E-08	ribonuclease III [Bacillus thuringiensis serovar kurstaki str. HD73]
trEMBL	tr\|V7CEX6\|V7CEX6_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW28727.1}

Sequence

Transcript Sequence

>Glyur000042s00005071.1
GGCTTACAAAATGAAATGAACACGAAATATCTATCACCTTATCCAACCCTCCGAGAGTCCAAAACCCTGCAANACGACGCCCCAAACCCTGTGCCCATCTATGGTGTCAAAACCGATACAAAAATCCACAAATCAATCATATTAATGTTCGTAGCCCACCTTCTACAAAGAACATTTCCCACCACAGTACCTTCCACCAATGGAACTTTCTTCCTCCTTTTTACCCTCCCCAAAGCCATGCCCATCCTCACCATCTAACTACTCTTTCTCATCCTCGTTCTCTCCATTCCCGATTCAAATTCTCGTGAGAAACTCCAAATCCCGAAACCCCTCCTCACAGAGCCCTCGTATTTTCGCGGTAGCCATAGAACCGACGAAGGAACTCCCGGAGAACAGTCCTCAGCGACTCCTGAAGGAGCTCGCAGAACGCAAAAAAGTCACTTCTCCGAAATCAAAGGGACCCCCAAGAAGGTTCATCCTAAGGCCCCCACTAGATGATACCAAATTAGCGGAAAGGTTTCTCAACAGCCCACAACTCTCGCTAAAATCGTTCCCTCTATTGAGTTCATGCTTACCTTCCTCGCGCCTCAACAATGCCGATAAGACGTGGATTGAAGAGTACTTGCTCGAAGCGAAGCAAGCTCTTGGGTATTCACTTGAGCCATCGGAGACTCTCGGCGACGATAATCCCGCGAAACAGTTTGATACTTTGATGTATTTGGCGTTTCAGCACCCTTCATGTGAGAGAACGAAGGCGAGGCACGTGAGGTCGGGGCATTCGAGGTTGTCTTTTTTGGGGCAGTATGTGCTTGAATTGGCGCTCGCTGAATTCTTCTTGCAGAGGTATCCGAGGGAGTCTCCGGGTCCAATGAGGGAGAGAGTGTTTGGGTTGATAGGGAAGTGTAACTTGCCTAGGTGGATTAAAGCCGCTAGCTTGCAGAATTTGGTGTTCCCTTATGATGATATGGATAAGATTGTGAGGAAGGAAAGGGAGGGACCTGTCAAGTCCGTATTTTGGGCTATGTTTGGGGCAATCTATCTCTGTTTTGGTATGCCAGAAGTCTATCGTGTTCTTTTTGAAGTCTTTGGAATGGATCCAGATGCTGAGGATTGCCAGCCTAAGTTGCGCAGACAACTTGAAGATGTGGATTATGTATCTGCCGAGTTTGAAAACAAGCTAAGCTGGCAAGATATACCTCCTGCAGATGCTCTGTTTGCTCATCCAAGGCTGTTCAGAGCTTGTGTTCCCCCAGGCATGCATCGGTTCAGAGGAAATATATGGGATTATGATAGCAGACCCCAAGTTATGAAAACACTTGGATATCCATTAGAAATGACTGACAGAATTCCAGAAATTACGGAAGCCAGGAACATAGAGCTTGGTCTTGGATTGCAGCTTTGTTTCATGCATCCATCAAAGTATAAATTTGAGCATCCTCGGTTTTGTTTTGAGAGATTAGAATATGTTGGCCAAAAGATACAGGATTTGGTGATGGCGGAAAGATTGTTGATGAAGCATTTAGATGCTCCTGGGTTGTGGCTTCAAGAGAGACATCGTCGCATTCTTATGAACAGAAATTGTGGAAGATACTTGAGGGCCAAACAGCTCCACCGTTTTATTATATATGCTGAGAAGGTTCAAGACTCTTATGAGCGCAACCGGAGACGGCGAAACCCAGCCTCAACAGCTGTTCAACAAGCTATTCATGGGCTATCATATCTTGTTTATGGGAAACGTGATGTGAGACGTCTGATGTTTGAGGTTTTTGACCTAGAGCAGATCCAGCCTAAAGAGGTCTAAATATGAGACAAGAGTGAAATAACAATAGAAGTACTTCCGTCTTGCTTTTTCAGTCCTATTTCTTTTTTCTTTTCCATCCCGTTAATCTAGGCTTTTGCATATTATGATTTGTTCTCCTAGTTTTNGGTGATTTACAATTTTTTCTTTGGAAGTTGCTCTTGTATATATTGATTGTATTTTAGTTTTTGATATTTGGGAGCCCTAGACAAACCCAAAGTGCACTGAGATGGGGATACATATGTGACTACTCAGTACTCACCATGGCTCAGACCATGGAGCAAAAGCATATCGATGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00042	205773	210726	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006396 RNA processing

GO:0016075 rRNA catabolic process

molecular_function

GO:0003723 RNA binding

GO:0004525 ribonuclease III activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000042s00005071.1	PF14622.1	Ribonucleas_3_3	170	291	5.20E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.839
SRR1783600	control	9.772
SRR1783602	moderate drought stress	14.516
SRR1811619	moderate drought stress	14.278

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.343
DRR006520	Root Summer glycyrrhizin high producing strain	13.777
DRR006521	Root Winter glycyrrhizin high producing strain	8.068
DRR006522	Root Winter glycyrrhizin high producing strain	8.159
DRR006523	Root Summer glycyrrhizin low producing strain	17.108
DRR006524	Root Summer glycyrrhizin low producing strain	16.817
DRR006525	Leaf Summer glycyrrhizin high producing strain	37.842
DRR006526	Leaf Summer glycyrrhizin high producing strain	37.694

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.037
SRR2868004	Drought Stress (root)	8.349
SRR2967015	Control (root)	9.286

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.451
SRR9715740	Leaf	55.620
SRR9715741	Leaf	26.547
SRR9715739	Root	8.211
SRR9715742	Root	13.630
SRR9715743	Root	11.201

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.601
SRR8749028	MeJA induced 9h	14.387
SRR8749029	MeJA induced 9h	9.129
SRR8749030	Uninduced	4.106
SRR8749031	Uninduced	4.213
SRR8749032	Uninduced	3.809

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.948
SRR8400027	Control - Root	10.146