Gene detail

Gene detail information of Glyur000042s00005059.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G49940.1	6.00E-67	LOB domain-containing protein 38
NR	XP_003517339.1	3.57E-148	PREDICTED: LOB domain-containing protein 37-like [Glycine max]
Swissprot	tr\|Q9SN23\|LBD38_ARATH	2.00E-82	LOB domain-containing protein 38
trEMBL	tr\|I1J9D3\|I1J9D3_SOYBN	1.00E-148	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G40010.1}

Sequence

Transcript Sequence

>Glyur000042s00005059.1
CCGACGAAAAGGAAAGGCAAATATCAAATTCTGGAACTCCAAAGAGAAAAATATAAAAGAATCCAACGGTTGAGGAACATCCATCCGCGGAAACACGGAGCCGCTCACGCCCAAGACCTTGGAATCTCACCCTTCCATACAAAACAGAAACGACGCTGTACTGCACGCAGACACACGCACTCACTCACGCTCCCCTCCCAACTAACCTAACCCTAGTTAACTCCTAACCCTAACCCCCTCACCCCTCTCTCGTTTCTTCCTCCTCCTGGTTAAAGTTTATTTATACCCCAACTGCACCTTCCCCCAAGTTCCATTCTCTGTCCTTCCTCCTCCTCCTTCTCCTCCTCCTTTCAATCTCCCATTACTTCCTCCTCCTCGTTCCTCCGTCCTCGGTTTCCATGTAAGGACGATCTCGCAACTAGCTAGGTTCGGTCATAACAGAACACAACAACAAAAACAAAAACGCTGTCCTATCACACGCTCTTCTGATTTGCGGTTTGTAACTAACTTTTTAGCCAAACAGAGGGATGAGTTGCAACGGTTGCCGAGTCCTTCGAAAGGGTTGCAGCGAGTCCTGTATCTTACGGCCTTGTCTGCAGTGGATCGANACCCCCGAAGCCCAAGGCCACGCCACTGTCTTCGTTGCCAAATTCTTCGGCCGTGCTGACCTCATGTCCTTCATTTCCAACGTCCCTGAACCCCAAAGACCTGCTCTGTTTCAGTCTCTGTTGTTTGAAGCGTGTGGACGAACGGTGAACCCAGTGAACGGTGCCGTGGGGCTTTTGTGGACAGGAAACTGGCACGTGTGCCAGGCGGCGGTTGAAACGGTGCTACGTGGCGGGACCCTCAGGCCCATACCGGAGCTTCTCGGTTTAGACGCTCCTACTCCTACCGGCGTCGACGACGCATCCGAAGGTGAAGTTACCTGTAAGCAAATGCGAAAGACCCGAGATCCGAACCCGAATTCCCGGTTCACGGGTTCGCGGTCTAATAAGGTAGCTTCCGGTGGTAAACGCAAGCGATCGGATGAGGTAGCGAAGATTCAGACGGCGACGACCGATCTCAACCTTCGGTTGACGCCGTGTTTCCTGCAGAACGCGTCGAGCTATGGCTGCCGGCGNCCGGGGACGCCATCGATGAATTCGGAGGAGTCTGTGACGACGACGGCGTGCTTGGAAAGCGGGATTGGAGATCACTACTACGCTCACGATGGAGACCGGAAAGTGCTCAACCTTTTCATTTGAGGGCTTTCTTTCTCTCTGAGATTCGTGTTTTTTTTCTTCTGAATCTTCCAATTAAGGGGTCGCTCCCACGCGGTGTTTTTTTTTGTCTTTTTTGTACGCTTAACTTTCACGGAGCAGAAATCCGGTGAGATTTTGTAAGACGCCGGCACAGGATTTTTCTCTGTTCTTTGTAGACAGGGAGAAAGATGAGGGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00042	150707	152244	+

Gene family

Gene family	subfamily
Transcription Factors Family	LOB
EAR motif-containing Proteins	LOB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000042s00005059.1	PF03195.9	DUF260	2	103	9.70E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.185
SRR1783600	control	26.319
SRR1783602	moderate drought stress	39.648
SRR1811619	moderate drought stress	39.548

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	29.528
DRR006520	Root Summer glycyrrhizin high producing strain	29.201
DRR006521	Root Winter glycyrrhizin high producing strain	28.486
DRR006522	Root Winter glycyrrhizin high producing strain	27.889
DRR006523	Root Summer glycyrrhizin low producing strain	13.461
DRR006524	Root Summer glycyrrhizin low producing strain	13.640
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.190
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.252

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.410
SRR2868004	Drought Stress (root)	18.276
SRR2967015	Control (root)	25.712

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	37.642
SRR9715740	Leaf	45.836
SRR9715741	Leaf	53.126
SRR9715739	Root	222.504
SRR9715742	Root	134.972
SRR9715743	Root	149.599

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	101.892
SRR8749028	MeJA induced 9h	24.448
SRR8749029	MeJA induced 9h	51.248
SRR8749030	Uninduced	9.027
SRR8749031	Uninduced	7.604
SRR8749032	Uninduced	29.104

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.310
SRR8400027	Control - Root	10.665