Gene detail information of Glyur000042s00005056.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G23070.17.00E-143Protein kinase superfamily protein
NRXP_004509070.12.44E-180PREDICTED: casein kinase II subunit alpha, chloroplastic-like [Cicer arietinum]
COGYP_001089094.13.00E-13serine/threonine-protein kinase and phosphatase [Clostridium difficile 630]
Swissprottr|O64816|CSK2P_ARATH0Casein kinase II subunit alpha, chloroplastic (Precursor)
trEMBLtr|A0A067KIG2|A0A067KIG2_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP32060.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00042129469134475-


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:4.5.3


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
K03097CSNK2AEC:2.7.11.1Ribosome biogenesis in eukaryotesmap03008
Wnt signaling pathwaymap04310
NF-kappa B signaling pathwaymap04064
Mitophagy - yeastmap04139
Adherens junctionmap04520
Circadian rhythm - plantmap04712
Measlesmap05162
Herpes simplex infectionmap05168
Epstein-Barr virus infectionmap05169


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000042s00005056.1PF00069.20Pkinase1161821.30E-10
Glyur000042s00005056.1PF00069.20Pkinase1883582.10E-36


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.812
SRR1783600control18.626
SRR1783602moderate drought stress22.158
SRR1811619moderate drought stress21.980

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain18.641
DRR006520Root Summer glycyrrhizin high producing strain17.626
DRR006521Root Winter glycyrrhizin high producing strain17.870
DRR006522Root Winter glycyrrhizin high producing strain16.041
DRR006523Root Summer glycyrrhizin low producing strain27.732
DRR006524Root Summer glycyrrhizin low producing strain27.595
DRR006525Leaf Summer glycyrrhizin high producing strain16.409
DRR006526Leaf Summer glycyrrhizin high producing strain16.706

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)35.257
SRR2868004Drought Stress (root)30.220
SRR2967015Control (root)33.689

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf24.589
SRR9715740Leaf21.128
SRR9715741Leaf23.630
SRR9715739Root8.541
SRR9715742Root16.998
SRR9715743Root17.945

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h27.336
SRR8749028MeJA induced 9h22.753
SRR8749029MeJA induced 9h21.045
SRR8749030Uninduced26.480
SRR8749031Uninduced25.435
SRR8749032Uninduced25.389

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root39.488
SRR8400027Control - Root36.676

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved