Gene detail

Gene detail information of Glyur000042s00005048

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G67460.1	3.00E-75	O-Glycosyl hydrolases family 17 protein
NR	XP_003517342.1	0	PREDICTED: glucan endo-1,3-beta-glucosidase 3 [Glycine max]
Swissprot	tr\|O65399\|E131_ARATH	2.00E-27	Glucan endo-1,3-beta-glucosidase 1 (Precursor)
trEMBL	tr\|I1J9D6\|I1J9D6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G40060.1}

Sequence

Transcript Sequence

>Glyur000042s00005048.1
ATGGGGTTGCTATTTCACCTCACCTTTCTTTGTTCGCTGGGTCTTACTGTTGCTGGTCAAGAATCCATTGAGCTCCTAAACCTCTGTGAGACAAGCGATGACATTTCACAAGCCTCATCACACGGTGAGCTTCCCTTAGCTGTTTCGCTGAGCGCCGGAGACCTCAATGGGGTCTCTGCCAGCATTTTAACAGCTGAGAGTTGGCTCAGGTCCAACGTTCTTGCACATTNCCCTGCCGCAAAAATCACCAACGTTGTTGTGGCAACCTCTGCTTTCTGCCAACAACAACAGCAACAGAACTTCGTTGTGATTCTGCCTGCTCTGAAGAATGTCTATCACTCACTGAGAAGGTGGGGTTTGGAGAAAGACATCAAAGTCTCCGTTGCTTTCCATTTGGACTGTTTGCATCCAAACTCACCTTCTCACAGCAACGATGACGGTTTGAAAATGGTGAAACCTTTGATGGAGTTCCTCCAAAGTGTAAACTCCACGTTCTCTATCATCCCACATTCGGGGTTCTCCCATTTCTCAGATAAAAGTCTGAACTTGGTGTCTTCCCACTTGGACTCCATGAAAAAGCTTGGATTTTTCCATCTCAACAATATGAACATTGTTGCAGCCATTGTTCCAAAAGGAAGAAAACCCATAACTAGAAAGCTTTCAGTTGTGGATTCAAGCCTAACAAGCACATTCCCAATAAAACCAACCCCAATGCCAGAAATAGCTGAACCCCCACTTGTTGGTTATCCTGCTCCTGCAAATGTAGCAAGAAACCCTTTGCCTCCTTTAGCTCAAGTAGTTTCTTCTCCCCCTCCAATGTCTTCCACTTTTNCCCCTGAAGAACCACCACCGTTTGTTGTTCCTGCTAGTTCGCCTCATGGCTTCACTTTGCCTCCTTGCAATCCAATCAACAATGGCTCACCTTATCCCCAAATAGTCCCTATCCAGAAACTGTGGTGTGTGGCAAAGCCTAGTGTACCTGAAGACACACTGCAACAGGCTTTGGATTATGCTTGTGGAGAGGGTGGTGCTGATTGCATGGAGATAACCCCTCAGGGGAACTGTTACAATCCTGACACTGTGGTTGCTCACGCTTCTTATGCATTCAACAGTTACTGGCAGAAGCACAAGAGAAATGGTGGAACTTGCAGCTTCGGAGGGACTGCAATGTTGATAAATTCTGATCCAAGTTTCCTTCACTGCCGGTTTGTTCTCAGCTAGATACAATACAAGTGGNAAAAAAAGAGTGGCACTTGCGGGTTTCTTTGTTCTGCAGTTAGTTAGTGTAGAGAATCTTATGTTAAGGTAAATTTGGCTTTTGATTCATTTTGAAGCTAGGAGTTGGTTTATGTATAATGTATGGACCAATTTAGAGAATTTATGTCTTGGTTAGTAACTTAGTACTACTGATTGAGTATCGTGGGAACAACTTATAGAGCTTTGGGCTTAATTGTTATTATTTTGTTTCTCCATGGTATTTACGTGGAAGGATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00042	86363	88083	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH17,CBM43

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000042s00005048.1	PF00332.13	Glyco_hydro_17	22	165	3.20E-12
Glyur000042s00005048.1	PF07983.8	X8	318	390	6.10E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	27.738
SRR1783600	control	28.006
SRR1783602	moderate drought stress	14.426
SRR1811619	moderate drought stress	14.050

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	37.348
DRR006520	Root Summer glycyrrhizin high producing strain	36.902
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	4.589
DRR006524	Root Summer glycyrrhizin low producing strain	4.616
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.168
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.097

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.226
SRR2868004	Drought Stress (root)	4.601
SRR2967015	Control (root)	8.262

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.813
SRR9715740	Leaf	0.042
SRR9715741	Leaf	1.708
SRR9715739	Root	15.746
SRR9715742	Root	5.246
SRR9715743	Root	6.029

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	34.269
SRR8749028	MeJA induced 9h	5.420
SRR8749029	MeJA induced 9h	9.473
SRR8749030	Uninduced	0.170
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.617

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	55.587
SRR8400027	Control - Root	56.199