Gene detail

Gene detail information of Glyur000042s00005046

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G67470.1	2.00E-172	formin homolog 6
NR	XP_003538791.1	0	PREDICTED: formin-like protein 6-like [Glycine max]
Swissprot	tr\|Q9FJX6\|FH6_ARATH	0	Formin-like protein 6 (Precursor)
trEMBL	tr\|I1LH70\|I1LH70_SOYBN	0	Formin-like protein {ECO:0000256\|RuleBase:RU361260}

Sequence

Transcript Sequence

>Glyur000042s00005046.1
CTCTCATTTATTACCCTGTAAAATAAAATTTTAAAAAAAGAAAGAAAATAAAATAGCGTTTGACGATGACATAAATTAAAAAGAAAAGGCAAAATAAAATATAGGCAAAAAGGGAAAATAAAACTGCGGCCTCTGCTGACGGAAGCTGTTTGGAGCAACAGAGCATCCAGATCTTACATTACAGCCGAAAGAAGTTTCCTCTGTTTCTCTCTCTCTCTCTCTTATTTCGAGCTGAGGAATTTGCGGGGACAAAACAGAAATTACGAAATCAAGACATGAATTGGGCGAAACAAAAGGGAATAAGCTGCCAAACCCACAAAAATTCACCATGAAAGCTCGTCACTTGAGCTTCTTCTACACCATCGTCATCATCGTCTCACTGTCCCTGTCCATCCCAGTCAACACTGCAAGAGGGGTCAACATCACCGTTCAATTCCGCCCCACAAATGAATCCGATCACACAAGGAGAATTCTCCATCAACCATTGTTCCCGGCGAGTTCAGCTCCACCGCCAGCAACAACCGAGTCGCCGCCGCAGCAGGAGACTCCTCCATCATCCGACGGCGGCGACATTCCCTTCTTCCATGAGGACCCAGCTGGGCCNCCCNCAGCGGATCAGAATCAGCAATCAGCACCTTCAACGTCGTCTAACGGCACAACAACGGCGAACCCAACGGCAACACAGCCAACGAAGGGAACAAAGAAAGTTGCCATTGCGATCTCCGTTGGGATTGTGACGCTGGGTATGCTCTCTGCACTCGCCTTCTTCTTATACAAGCACAGAGCCAAACACCCAGTTGAGACCCAGAAGCTAGTGGGCCAGAGGAACCACCACACCGAAGACTCAACGGCACCACNACCACCACCGTCGAGCTTCCTCTACATTGGGACCGTGGAACCGACGCGGACCTCAACGACGGCGAACGAGCATAGAGAATCCGATANGCCAATCAGGTCGCCTTATCACAAGCTCAATTCAATCAAGCGATCTGATCGGTACCGTCCAAGTCCTGAGCTTCAGCCAATGCCGCCGCTCACCAAGCTTCCCGATGGGAACCACCCGCCGGCGGTGTCGTCGCCGTCGTCGGAAGACACCGACGAAGAGAGCCACGAGACGGCGTTTCACTCGCCNCAGAACTCGTCGCTGAGTCACGAGGATGGGTTTTACACGCCGGTTTCGCGTCAGAGCTCTCTTGTTAACGGTAGCCCCGCCAAGTCCCTTCCAATGTCGAAGAGAACTTCACCAAAGTCTCGCCTTTCGGCTTCATCGCCGGATATAAGACACGTCATCATACCCTCTATAAAGCAGACTCCGCCGCCGCCGCCACCTTCCAGAAAGCCAAAGTTCTCAGCGCCACCTCCGCCTCCGAATTTGGCGCATCTTCAATCAACAACTAATACAAGTTTCCACGTGTCAAGGACTTCACTCAATCCTCCTCCTCCTCCACCNCCACCGCCGCCNCCTCCTCCTCCTCCGCCACCGCCAACGAGAAAAAATGGGTCGCCGGCGGTTGGAGTTTCCTCTTCTTCTGCATCTATAAAGCGGCAATCTTGGTCACCGAGTGNAGGAGGTGGTTCTTCTGCTGGTAGTGTNACAACAAAAGGTTCAGAGCGTGTTGTTGATAATAAGGGTGTGAGTGTGAGCTCTTCCGAGAGGCTGGAAGAAGCCAATGACACGGAAGGAGTGAAACCAAAGTTAAAGGCTCTGCACTGGGACAAAGTCCGTGCTACCTCAGACCGTGCTACAGTGTGGGACCAGATTAAATCAAGCTCGTTTCAATTAAATGAGGACATGATGGAGTCCTTGTTTGGCTGCAACAATGCCGCGAATCCTGCCCCGAAAGAACCTCCTAGAAAATCGGTTCTCCCCTCCGCTGATCAGGAGAACAGAGTGTTAGACCCTAAGAAGTCCCAAAACATAGCCATACTGCTGAGGGCACTGAATGTGACAAGAGATGAGGTGTCCGAAGCTCTTTTGGATGGTGAGTTTGTTTTGGACTTTATATTTGCACGACAAATGAGAATAATAAATGTATACACTATTGTTTGTTTCTNCCTTGAACTAATTGCTTATCTGCATCCTTTGTTTTCACTTTGCAACAAACAGTGGTGTTATTTTTTGGATGAAACAGGGAATCCTGAAGGTTTAGGTGCTGAGCTGTTGGAAACCCTAGTGAAGATGGCTCCTACTAAAGAGGAAGAGATAAAACTTAAAAACTATGATGGTGATCTCTCAAAACTTGGATCTGCAGAAAGATTTCTTAAAGCTGTGCTTGATATCCCTTTTGCCTTCAAAAGAGTTGAAGCTATGCTATACAGAGCCAACTTTGATTCAGAAGTTAGCTACCTTAGGAAGTCTTTTCAAACCCTGGAGGCAGCATGTGTGGAATTGAGAAACAGTCGGTTATTCTTCAAACTCCTTGAAGCCGTTCTCAGGACGGGAAACAGAATGAATGTTGGCACTAATCGAGGTGATGCTAAAGCTTTCAAACTGGACACACTCCTAAAACTTGTAGATATAAAGGGAACAGATGGAAAGACCACATTGCTCCACTTTGTGGTCCAAGAGATCATTAGAACTGAAGGTGTAGGAGCTGAATCTGCAAACGATAGTGNGCAGAACCAAATGGATTCGAAATTTAATGAGGATGAGTTCAAGAAGAAAGGATTGCAGATTGTGGCGGGGCTCAGTAGAGACCTTATTAATGTCAAAAAAGCAGCGGCAATGGACTCGGATGTCTTAAGCAACTATGTTTCAAAGCTTGAGANGGGGCTCGATAAAGTGCAATCGGTTTTGCAATATGAGAAGCCAGATATGCGAGGCAATTTCTTTAACTCCACAAAGCTATTTCTGAAATATGCTGAAGACGAAATTGTAAGGATTAAGGCTGANGAGAGGAAGGCCTTAATCCTTGTGAAAGAAGTTACAGAATACTTTCATGGAAATGCAGCAAAAGAAGAAGCCCATCCTTTCAGAATCTTTATGATTGTGAGAGACTTTCTAAATATTTTGGATCTAGTTTGCAAAGAAGTGGGGAGGATGCATGATAGAATTGTTGGTGGTTCTTCCAGATCCTTCCGAATAGCTACAAGTGCATCANTACCTGTTCTCAACAGGTACAATGCCAGACAAGATAGAAGTTCCGATGAGGAAATCTCATCCCCTTAGTAATGTGAATACGAAAGAAAACAATAGTCTCTCAAAATAACAGTGAAAGTAAATGAAAATGCTTTTGCAAATTTAAGTTCATCGCCAGCATTCCAGGTTTATATACATCGGGTTTAATCCCATTTCACTAGTAGTAGTGAAGAAAGGACAACCTTCCCTCACTGANACCGAACATCAAACACGTTAAATGCATGGTGGGGGAGAACCATTGAAAGGATATATTGGTTTACACAAGTGGGCTGCAAAGGTTCATGCTGTCATCNTCATTCAACTTCACATGAAGAATAAAGGAATTTTCAAATGGGTGGTGCAGGGGATACAATACGTATGCTACAGTCAAAATAGGTTTTATTAGACCAGAGTTCCACACATTTTCATGTTGTAGAATGTCTTGATTTTACTTAAGAGGCTATATATGTATTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00042	68610	73511	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000042s00005046.1	PF02181.18	FH2	451	895	1.50E-113

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	30.718
SRR1783600	control	30.759
SRR1783602	moderate drought stress	36.533
SRR1811619	moderate drought stress	35.962

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.174
DRR006520	Root Summer glycyrrhizin high producing strain	18.953
DRR006521	Root Winter glycyrrhizin high producing strain	8.182
DRR006522	Root Winter glycyrrhizin high producing strain	8.004
DRR006523	Root Summer glycyrrhizin low producing strain	20.470
DRR006524	Root Summer glycyrrhizin low producing strain	20.438
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.443
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.294

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.657
SRR2868004	Drought Stress (root)	9.690
SRR2967015	Control (root)	11.717

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.513
SRR9715740	Leaf	2.763
SRR9715741	Leaf	2.076
SRR9715739	Root	4.994
SRR9715742	Root	10.608
SRR9715743	Root	10.423

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.088
SRR8749028	MeJA induced 9h	9.002
SRR8749029	MeJA induced 9h	7.642
SRR8749030	Uninduced	7.566
SRR8749031	Uninduced	4.834
SRR8749032	Uninduced	3.150

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.766
SRR8400027	Control - Root	24.688