Gene detail information of Glyur000042s00005041


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G37640.10calcium ATPase 2
NRKEH27503.10calcium-transporting ATPase 2, plasma membrane-type protein [Medicago truncatula]
COGYP_501831.12.00E-82calcium-translocating P-type ATPase, PMCA-type [Methanospirillum hungatei JF-1]
Swissprottr|O81108|ACA2_ARATH0Calcium-transporting ATPase 2, plasma membrane-type
trEMBLtr|A0A072UEI2|A0A072UEI2_MEDTR0Calcium-transporting ATPase {ECO:0000256|RuleBase:RU361146}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold000423335536349+


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0070588  calcium ion transmembrane transport


cellular_component

GO:0016020  membrane

GO:0016021  integral component of membrane


molecular_function

GO:0000166  nucleotide binding

GO:0005388  calcium-transporting ATPase activity

GO:0005524  ATP binding

GO:0046872  metal ion binding

"


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000042s00005041.1PF00122.15E1-E2_ATPase382561.20E-47
Glyur000042s00005041.1PF00702.21Hydrolase2615781.90E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.977
SRR1783600control6.202
SRR1783602moderate drought stress3.139
SRR1811619moderate drought stress3.015

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain22.588
DRR006520Root Summer glycyrrhizin high producing strain22.479
DRR006521Root Winter glycyrrhizin high producing strain1.317
DRR006522Root Winter glycyrrhizin high producing strain1.285
DRR006523Root Summer glycyrrhizin low producing strain41.739
DRR006524Root Summer glycyrrhizin low producing strain41.148
DRR006525Leaf Summer glycyrrhizin high producing strain11.901
DRR006526Leaf Summer glycyrrhizin high producing strain12.029

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)11.370
SRR2868004Drought Stress (root)20.493
SRR2967015Control (root)9.765

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf118.412
SRR9715740Leaf79.378
SRR9715741Leaf123.083
SRR9715739Root21.752
SRR9715742Root156.287
SRR9715743Root128.884

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h23.029
SRR8749028MeJA induced 9h33.462
SRR8749029MeJA induced 9h21.038
SRR8749030Uninduced30.829
SRR8749031Uninduced28.754
SRR8749032Uninduced14.931

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root7.441
SRR8400027Control - Root33.533

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved