Gene detail

Gene detail information of Glyur000042s00005040

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37640.1	3.00E-54	calcium ATPase 2
NR	XP_004509067.1	1.48E-71	PREDICTED: calcium-transporting ATPase 2, plasma membrane-type-like [Cicer arietinum]
Swissprot	tr\|O81108\|ACA2_ARATH	5.00E-62	Calcium-transporting ATPase 2, plasma membrane-type
trEMBL	tr\|V7CEN2\|V7CEN2_PHAVU	2.00E-71	Calcium-transporting ATPase {ECO:0000256\|RuleBase:RU361146}

Sequence

Transcript Sequence

>Glyur000042s00005040.1
GAAACTCTTCATAGAAAAGAATCTCCACTACCACTAGTCATTTTCCTTTTAATTCATTTATATAAGTCTAGTCTAACCCCCACCAGGCTCCAAGAGTTACAACACAAGAAGCCAACATAACGCATTTTATTAATCCAAATCCGTTCTTATTCTATCCCTCCCAAGAAGAGAGACCATAACCCATTCATTCCCAGAACAAGTACTCTCAGCTCTCCTAGTCCTCTCTGTATGTCTGCTTCTTCATCCCCACACCCACTCTAGAATGTTAATTTTTTTTTTTTGGTCCAACCCGACATTTTGGCTTTTATGAGGACCACCACCACACCAACACCCCCTCACCGCGTCCCTTCTCTTTCCACGAAATTGTCCTTCAAAATTGGTGCCTATTTATTACTACCTAACTTCTAAGAAGGCTGCTATATATAACTTGTTATATTATTACTTACCCGGTCACTGCTTAGAAACCAAGGACATATATATACATGCCTTTCTATAAGACCAGCCATGATGATCTGAGAGCCTCCTAGACCCAGTCCATTTCATATTTCGTAACGGTCACAGATATACAACAGACAATAGGCGTCAAAATATACAACACAGAAGACACAGTTCCTATATATTATTATATATAGAGAGAGCGCAAATTAGAGCAAAGGNAGGGTACTATTGCTTGTTATTGTTGGAGAGGACTGAGGAGGGTGATGGAGAGTTACTTGAATGAGAATTTTGGAGGAGTGAAGTCGAAGAACTCNTCTGAAGAAGCTCTTCAAAGATGGAGGAAACTATGCGGCGTCGTGAAGAACCCCAAAAGACGCTTTCGTTTCACTGCCAATCTCACCAAGAGGGGCGAAGCAGCTGCTATGCGTCGTACCAATCAGGAGAAGCTGAGGGTTGCAGTTTTGGTTTCCAAAGCAAAAAAAAAATTCATCCAAGGCGTGCAACCAAGCGATTACAAAGTAAAAAAAGAAGTTAAAGCTGCAGGATTAAAAAAATGTGGTGATGAATTGGGGTCAAAAAAAGAAGGCCATGAAGCAAAGAAGTTGAGATTTCATGGTGGGGTTAATGGAAAAAAAGAAAAGCTTTCTACATCAACAAAAAAAGGGCTTAGCAATGATGCTGAAAAAAAAAATAGGAGACAACAGATATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00042	30219	33285	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005516 calmodulin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000042s00005040.1	PF12515.3	CaATP_NAI	4	51	1.80E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.811
SRR1783600	control	17.031
SRR1783602	moderate drought stress	9.154
SRR1811619	moderate drought stress	9.141

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	48.988
DRR006520	Root Summer glycyrrhizin high producing strain	47.162
DRR006521	Root Winter glycyrrhizin high producing strain	3.077
DRR006522	Root Winter glycyrrhizin high producing strain	2.647
DRR006523	Root Summer glycyrrhizin low producing strain	95.465
DRR006524	Root Summer glycyrrhizin low producing strain	94.360
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.623
DRR006526	Leaf Summer glycyrrhizin high producing strain	29.270

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.310
SRR2868004	Drought Stress (root)	20.443
SRR2967015	Control (root)	10.841

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	108.055
SRR9715740	Leaf	67.602
SRR9715741	Leaf	101.558
SRR9715739	Root	26.762
SRR9715742	Root	213.819
SRR9715743	Root	170.370

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.604
SRR8749028	MeJA induced 9h	47.716
SRR8749029	MeJA induced 9h	15.749
SRR8749030	Uninduced	15.317
SRR8749031	Uninduced	15.992
SRR8749032	Uninduced	6.573

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.999
SRR8400027	Control - Root	51.527