Gene detail information of Glyur000042s00005038 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G67510.1 | 6.00E-48 | Translation protein SH3-like family protein |
| NR | XP_004511841.1 | 8.73E-99 | PREDICTED: 60S ribosomal protein L26-2-like [Cicer arietinum] |
| COG | NP_579542.1 | 3.00E-27 | 50S ribosomal protein L24 [Pyrococcus furiosus DSM 3638] |
| Swissprot | tr|P51414|RL261_ARATH | 5.00E-91 | 60S ribosomal protein L26-1 |
| trEMBL | tr|I3SSN9|I3SSN9_LOTJA | 2.00E-98 | Uncharacterized protein {ECO:0000313|EMBL:AFK43281.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00042 | 21006 | 21618 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000042s00005038.1 | PF00467.24 | KOW | 51 | 82 | 9.40E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 321.069 |
| SRR1783600 | control | 322.457 |
| SRR1783602 | moderate drought stress | 342.103 |
| SRR1811619 | moderate drought stress | 339.110 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 435.327 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 428.912 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 252.715 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 246.160 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 358.793 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 359.733 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 99.171 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 99.377 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 625.940 |
| SRR2868004 | Drought Stress (root) | 412.294 |
| SRR2967015 | Control (root) | 373.321 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 247.402 |
| SRR9715740 | Leaf | 193.760 |
| SRR9715741 | Leaf | 190.119 |
| SRR9715739 | Root | 615.514 |
| SRR9715742 | Root | 444.517 |
| SRR9715743 | Root | 426.259 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 414.113 |
| SRR8749028 | MeJA induced 9h | 139.058 |
| SRR8749029 | MeJA induced 9h | 252.081 |
| SRR8749030 | Uninduced | 50.347 |
| SRR8749031 | Uninduced | 22.753 |
| SRR8749032 | Uninduced | 63.743 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 583.674 |
| SRR8400027 | Control - Root | 553.586 |