Gene detail information of Glyur000042s00005036 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G49900.1 | 3.00E-74 | Phototropic-responsive NPH3 family protein |
| NR | XP_006573662.1 | 3.35E-171 | PREDICTED: BTB/POZ domain-containing protein At3g49900-like [Glycine max] |
| Swissprot | tr|Q9M2W8|Y3990_ARATH | 3.00E-96 | BTB/POZ domain-containing protein At3g49900 |
| trEMBL | tr|K7K4Q7|K7K4Q7_SOYBN | 1.00E-171 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G40161.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00042 | 14926 | 18551 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000042s00005036.1 | PF03000.9 | NPH3 | 184 | 239 | 5.30E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.698 |
| SRR1783600 | control | 2.343 |
| SRR1783602 | moderate drought stress | 1.898 |
| SRR1811619 | moderate drought stress | 2.077 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.153 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.054 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.876 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.687 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.599 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.546 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.416 |
| SRR2868004 | Drought Stress (root) | 4.251 |
| SRR2967015 | Control (root) | 3.143 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.732 |
| SRR9715740 | Leaf | 1.307 |
| SRR9715741 | Leaf | 1.746 |
| SRR9715739 | Root | 1.790 |
| SRR9715742 | Root | 2.423 |
| SRR9715743 | Root | 2.961 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.245 |
| SRR8749028 | MeJA induced 9h | 0.736 |
| SRR8749029 | MeJA induced 9h | 0.485 |
| SRR8749030 | Uninduced | 1.221 |
| SRR8749031 | Uninduced | 1.113 |
| SRR8749032 | Uninduced | 0.648 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.082 |
| SRR8400027 | Control - Root | 4.609 |