Gene detail

Gene detail information of Glyur000041s00007137

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G06430.1	FTSH protease 8
NR	AID69949.1	metalloprotease [Cicer arietinum]
COG	YP_007090851.1	membrane protease FtsH catalytic subunit [Chroococcidiopsis thermalis PCC 7203]
Swissprot	tr\|O80860\|FTSH2_ARATH	ATP-dependent zinc metalloprotease FTSH 2, chloroplastic (Precursor)
trEMBL	tr\|A0A068FQM7\|A0A068FQM7_CICAR	Metalloprotease {ECO:0000313\|EMBL:AID69949.1}

Sequence

Transcript Sequence

>Glyur000041s00007137.1
CGTGAGAAAAAAATCCTGTGATGACATGGTAAAAACTCCAAAATCCCAAAAAAGAGAAAAATCTTGCGTAGGCCATTTGCTCATTTGATTTCCCCTCGTCACATCCATTTCTCTCTCACCCCATCCCAACCCAAACACGTCTCTTCTCTTGTGTGCACACACTCAATTCAAACACTGATTTTTTCTTTGACAAAAAAAAACTGATTTTTTTCAGTCAAAAAATTAAAATTACATTCCTGTTATGAACGATCATCTTCTTAAGAGGGTTTTGCTTACACTCTCACTTCCTCCTTTCTCTTCTTCTTCTTCATATCTCTGAGATTCTTCGTTTCTGAGATGGCAACATCATTGGCNTGTCTCGTTGGGAGTGGTTTATCTGCAAAGAGTAATAAAATAACTCTTGGCAAGGATGTAAATGGGAGATCTCTCCTCTTTTCTCAGCGACTTTCTTCATTGATTAGGGCATCAAAGACGGTATCAGTAAAGGCATCCTCGGATCAAAGGAAACATGAAGGGAGAAGAGGATTTCTGAAATCGTTGAATGTGGCAATTGGCTTACCAACATTATTAGGAAATGNGAAAGCTTATGCTGATGAACAAGGGGTTTCCTCCTCCAAAATGTCTTATTCTAGGTTTCTTGAGTATTTGGACAAGGGCAGGGTTAAAAAAGTGGATCTGTTTGAGAATGGAACTATAGCCATTGTAGAGGCNGTTTCTCCTGAGCTGGGTAACAGGGTGCAGCGAGTGCGAGTTCAACTTCCTGGACTTAGCCAAGAACTCCTTCAGAAATTCAGGGAAAAGAACATTGACTTTGCAGCTCATAACGCCCAAGAAGAGTCAGATTCTTTGTTTTCTAACCTGATTGGAAATCTGGCTTTCCCTCTAATTGTGATTGGAGGATTGTTCCTTCTCTCGAGACGATCATCCGGAGGGATGGGAGGTCCCAATGGCTCTGGCTTTCCTTTTGCTTTTGGTCAATCTAAAGCCAAATTTCAAATGGAACCAAATACTGGAGTGACATTTGATGATGTTGCTGGGGTAGATGAAGCCAAGCAGGATTTTATGGAGGTGGTGGAATTCCTGAAAAANCCTGAGAGGTTCACTGCTGTTGGGGCTCGCATACCGAAAGGGGTTCTTCTTGTTGGTCCCCCAGGGACNGGGAAGACGCTATTAGCCAAGGCTATTGCTGGTGAAGCAGGTGTCCCATTTTTCTCAATCTCAGGTTCTGAGTTTGTCGAGATGTTTGTTGGTGTTGGTGCTTCTCGAGTCCGTGATTTATTCAAGAAGGCCAAAGACAATGCTCCTTGCATTGTTTTTGTCGATGANATCGATGCCGTTGGAAGGCAGCGAGGTACTGGAATTGGTGGAGGGAATGATGAAAGAGAACAGACCCTCAACCAACTTTTGACTGAAATGGATGGGTTTGAGGGGAATACTGGTATCATTGTCATTGCAGCAACTAACAGGGCTGACATTCTTGACTCTGCTTTATTGAGACCAGGACGGTTTGATAGACAGGTAACGGTTGATATTCCAGACATACGGGGAAGGACTGAAATCCTAAAGGTTCATGGTAGCAATAAAAAGTTTGATGCTGATGTTTCTCTTGAGGTAGTTGCAATGAGGACACCTGGCTTCAGTGGAGCTGATCTTGCAAACCTCTTGAATGAAGCTGCTATATTAGCTGGTCGGCGTGGAAAGACAGAAATTTCATCCAAAGAGATTGATGATTCTATTGATAGGATTGTGGCGGGAATGGAAGGAACAGTGATGACGGATGGGAAGAGCAAAAGTTTAGTGGCATATCATGAAGTTGGGCATGCCATTTGTGGAACTTTGACTCCTGGTCATGATGCTGTACAAAAGGTAACCCTAGTTCCTCGCGGGCAAGCTCGGGGTCTTACTTGGTTCATTCCTTCTGATGACCCAACTCTGATCTCCAAACAACAACTCTTNGCAAGAATTGTTGGTGGGCTAGGTGGCAGAGCTGCTGAGGAAATTATTTTTGGNGAGCCTGAGGTTACAACTGGAGCAGCTGGTGATTTGCAGCAAATAACCAGTTTGGCTAAACAGATGGTAACCACATTTGGAATGTCTGATATTGGTCCTTGGTCACTTATGGACACCTCGGCTCAAAGTTCTGATATCATCATGAGAATGATGGCAAGAAACTCGATGTCAGAAAAGCTTGCCGAAGACATCGATGCTGCTGTCAAGAGGATCTCGGATGAAGCATATGCAATCGCGTTGAGCCATATAAGGAACAACCGCGAGGCCATGGATAAGATTGTGGAAGTCTTACTGGAGAAGGAGACAATGACCGGAGATGAATTCCGAGCTCTCCTGTCCGAGTTTGTTGAAATTCCACCTGAAAATCGGGCACCTCCTTCAACTCCCTCACCAGTAGCTGTTTGAATTGCCTATTTGTCACTGCAATTAATCTAGTTTAGCTCTCTTACATACTCAGTTTTTCTGAATTTGTATAATATTTGTAATATCCCCTTTACCCCAAATTCTTTAATCACAAAAGATCCTAGCTTGCTTCTCTCCTTCCCCCCCCCCCCCCCCCTTGTGTTCACAATAGAAAATATGTTCCTTCACAGTGTCAGTTAGTACATAATGTAACTCAAGTGAACAATAATAAGAAAGTATTCATACCTATTTCATCATTGTGCTGGTGACTACATGTTTAGTTTGAGTGTAAATGCTTTGTGCATGTGAGTTCTCTCGTTTTGGGCTCCANAGTAAAGGATGGCACACTTAATATTGTTGGGGTAAGCATGAGTTGAAATGGTGGTAATGATAAGATTGGGGGTATCATAGTGATATTTCAAGTGTTGATAGAGACACAGTGTAGGCTATGGAAGGAACAGGAATAGAGAGTTNTTTTATTTGGTGGATTCATTCTCAAAGTGGTAGTATCTATGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00041	464399	469042	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

cellular_component
GO:0016020 membrane

molecular_function

GO:0004222 metalloendopeptidase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000041s00007137.1	PF00004.24	AAA	266	397	1.50E-43
Glyur000041s00007137.1	PF01434.13	Peptidase_M41	460	669	1.70E-77

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.011
SRR1783600	control	21.265
SRR1783602	moderate drought stress	19.154
SRR1811619	moderate drought stress	18.888

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	29.522
DRR006520	Root Summer glycyrrhizin high producing strain	29.378
DRR006521	Root Winter glycyrrhizin high producing strain	39.746
DRR006522	Root Winter glycyrrhizin high producing strain	38.757
DRR006523	Root Summer glycyrrhizin low producing strain	63.646
DRR006524	Root Summer glycyrrhizin low producing strain	63.854
DRR006525	Leaf Summer glycyrrhizin high producing strain	117.489
DRR006526	Leaf Summer glycyrrhizin high producing strain	116.587

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.970
SRR2868004	Drought Stress (root)	26.870
SRR2967015	Control (root)	23.874

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	67.138
SRR9715740	Leaf	114.098
SRR9715741	Leaf	86.961
SRR9715739	Root	19.905
SRR9715742	Root	32.786
SRR9715743	Root	32.835

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	51.602
SRR8749028	MeJA induced 9h	40.314
SRR8749029	MeJA induced 9h	45.450
SRR8749030	Uninduced	51.228
SRR8749031	Uninduced	44.083
SRR8749032	Uninduced	34.406

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.563
SRR8400027	Control - Root	29.343