Gene detail

Gene detail information of Glyur000041s00007131

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G80420.3	2.00E-95	BRCT domain-containing DNA repair protein
NR	XP_004486715.1	0	PREDICTED: DNA repair protein XRCC1-like [Cicer arietinum]
Swissprot	tr\|Q24JK4\|XRCC1_ARATH	1.00E-115	DNA-repair protein XRCC1 {ECO:0000303\|PubMed:11909950}
trEMBL	tr\|I1M5N0\|I1M5N0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G43750.1}

Sequence

Transcript Sequence

>Glyur000041s00007131.1
AGTAACNGACTCAGAAAAGAAGCGAAACCTTTTCATAACAACAAACGCAGCAGCAGCGAAAGAAAGAGGAAGGAGGCAATCAACCAAAGAGGTTTCTTCACTGGAACTTGGGTGTTTTTCAAATTTGGTACTTTTTGCATCCTCCATGTAGTTCCTGTCATGTCTGGTACTAAAACAAGTGCTAATAACAGCAAAGGTTCCAAGAGAAACCTTCCATCATGGACGAGTTCGAGGGAGAATAAGGAGGATCAGAATTGTGGAAAGAAACCAACTTTGGATGGTGAAGGCGAGAAAGACAACAAGGGCAACGTACAAACTGAAAATGGTGGAAGATCTTCTGCATCATCTAGTTTGGAACCTAAAGGCTTCAACAAGCTTCTGGAAGGTGTGGTTTTCGTGCTGTCAGGGTTTGTCAATCCCGAGCGGGGCATGTTGAGGTCACAAGCCATGGAAATGGGAGCAGAGTATCAGCCTGAGTGGAACTCTGATTGCACTCTCTTGGTTTGTGCGTTTCCAAACACCCCCAAGTTTCGACAAGTTCAAGCTGATTGTGGAACCATTGTGTCAAAGGATTGGATAGTGGAGTGTTACACCCAGAGGAAGCTGATTGAAATTGAAAGCTACCTTATGCATGCGGGGAAACCATGGCGTAAAGGAAGTATCTCACATGAAGTCAATGAAGAACAAAAACCATCTTTACCAAAAAAATCACCAAAGCATGTTGAAAGAGAACTGCCTTCAAAGCCAACTACTTCCATAAAATCAAAGGGAAAAGACACCGGTGATGCTAGGAAATGCTTTGAGCCTTCTGAAGTGAAAAAGTGGGCTGTTGATGATTTGAACAAAACAATTCAGTGGTTGNAAAGTCAAGAAGAAAAGCCAGATTCCAGTGAGATAACAAAAATAGCTGCAGAAGGGATTCTGACTTGTTTGGATGATGCAATATGCTCTCTCACAGAAAAGCAGGATATCCGAAAAGGAACCGAGGACTGGAAATTCTTACCTCGAGTTGTTGACGAGCTTGCGAAGTTGGGAGATGATAAGGCTTCAATGTCAAAGGAAGATCTTCACAAGCAAGCACTGGATTGGAAGCGTATTTACGAGGCGGAACTAAATAGGTTAGACGATGAATTGACAAAGAATTCAAAAATGAATGAAGGAGGAAGGAGCAAAAAGGGAAGAACAATGGAGTATGATAGTGATGACACAGTTGAGATGACAGAACAAGAAATAGACCTTGCATATAAGACTATGGACATGTTTGGATAACAATTTATCTACTATTTATGGCATACGTTGTATAAGCTACTTTTATAATCGAAGAAAAATTATAGTGGAACTTATTTTATATAAGTCATAAGCTGTTTTGATAAGCTATCCTGGATAGCTTATGAAAAATAAGCACAAAATAGCTTATGAATCAGTCATAAGCTGTGTTCATAAGCTCTGCATAAGTCAATCCAAACAGACCCTATATCCTCTAACATGTGTCATGTGTGAATATGCCTATTGAACTTGTTTCTTTAGGGACGAAAAGTTAAAAGCAGTTATTTTGGTTTTACATAGATCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00041	427523	433226	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000041s00007131.1	PF00533.21	BRCT	125	196	6.70E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.178
SRR1783600	control	16.292
SRR1783602	moderate drought stress	16.594
SRR1811619	moderate drought stress	16.687

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	41.900
DRR006520	Root Summer glycyrrhizin high producing strain	41.555
DRR006521	Root Winter glycyrrhizin high producing strain	80.135
DRR006522	Root Winter glycyrrhizin high producing strain	77.557
DRR006523	Root Summer glycyrrhizin low producing strain	29.680
DRR006524	Root Summer glycyrrhizin low producing strain	29.769
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.548
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.701

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	31.325
SRR2868004	Drought Stress (root)	33.474
SRR2967015	Control (root)	34.967

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.326
SRR9715740	Leaf	18.389
SRR9715741	Leaf	16.890
SRR9715739	Root	0.768
SRR9715742	Root	5.993
SRR9715743	Root	4.918

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	72.544
SRR8749028	MeJA induced 9h	49.794
SRR8749029	MeJA induced 9h	70.519
SRR8749030	Uninduced	56.920
SRR8749031	Uninduced	90.121
SRR8749032	Uninduced	56.573

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.410
SRR8400027	Control - Root	26.528