Gene detail information of Glyur000041s00007125.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G04250.1 | 4.00E-36 | AUX/IAA transcriptional regulator family protein |
| NR | XP_006597139.1 | 3.75E-82 | PREDICTED: auxin-responsive protein IAA17-like isoform X2 [Glycine max] |
| Swissprot | tr|Q6AT10|IAA15_ORYSJ | 5.00E-52 | Auxin-responsive protein IAA15 |
| trEMBL | tr|I1MCK9|I1MCK9_SOYBN | 1.00E-82 | Auxin-induced protein {ECO:0000256|RuleBase:RU004549} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00041 | 365114 | 367252 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AUX/IAA |
| EAR motif-containing Proteins | AUX/IAA |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000041s00007125.1 | PF02309.11 | AUX_IAA | 41 | 196 | 4.20E-59 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.081 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.358 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.343 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.907 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.673 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.483 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.605 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 45.406 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 43.331 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.174 |
| SRR2868004 | Drought Stress (root) | 1.764 |
| SRR2967015 | Control (root) | 1.276 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 131.953 |
| SRR9715740 | Leaf | 73.348 |
| SRR9715741 | Leaf | 60.670 |
| SRR9715739 | Root | 0.239 |
| SRR9715742 | Root | 1.191 |
| SRR9715743 | Root | 1.142 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 43.537 |
| SRR8749028 | MeJA induced 9h | 88.740 |
| SRR8749029 | MeJA induced 9h | 49.091 |
| SRR8749030 | Uninduced | 20.596 |
| SRR8749031 | Uninduced | 9.973 |
| SRR8749032 | Uninduced | 23.423 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.547 |
| SRR8400027 | Control - Root | 1.137 |