Gene detail information of Glyur000041s00007121 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G80370.1 | 2.00E-106 | Cyclin A2;4 |
| NR | AFK37644.1 | 0 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9C968|CCA24_ARATH | 2.00E-133 | Cyclin-A2-4 |
| trEMBL | tr|I3SBK2|I3SBK2_LOTJA | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK37644.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00041 | 340254 | 348308 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000041s00007121.1 | PF00134.18 | Cyclin_N | 226 | 352 | 7.90E-41 |
| Glyur000041s00007121.1 | PF02984.14 | Cyclin_C | 355 | 425 | 1.80E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.618 |
| SRR1783600 | control | 4.405 |
| SRR1783602 | moderate drought stress | 2.928 |
| SRR1811619 | moderate drought stress | 3.073 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.027 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.182 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.182 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.018 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.654 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.877 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.377 |
| SRR2868004 | Drought Stress (root) | 6.748 |
| SRR2967015 | Control (root) | 7.934 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.974 |
| SRR9715740 | Leaf | 0.273 |
| SRR9715741 | Leaf | 0.839 |
| SRR9715739 | Root | 1.758 |
| SRR9715742 | Root | 2.049 |
| SRR9715743 | Root | 1.385 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 28.865 |
| SRR8749028 | MeJA induced 9h | 17.079 |
| SRR8749029 | MeJA induced 9h | 26.825 |
| SRR8749030 | Uninduced | 0.976 |
| SRR8749031 | Uninduced | 0.799 |
| SRR8749032 | Uninduced | 1.301 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.414 |
| SRR8400027 | Control - Root | 12.963 |