Gene detail

Gene detail information of Glyur000041s00007117

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G80360.1	1.00E-141	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
NR	XP_003543661.1	0	PREDICTED: bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase [Glycine max]
COG	YP_007141223.1	3.00E-61	aspartate transaminase [Crinalium epipsammum PCC 9333]
Swissprot	tr\|E9L7A5\|PAT_PETHY	3.00E-31	Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase (Precursor)
trEMBL	tr\|I1M5N9\|I1M5N9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G43830.1}

Sequence

Transcript Sequence

>Glyur000041s00007117.1
ATGCCAGTTATGGTTCAGATGCAGGAATTGCTCCGAGTCCGAGGAGGTAAGAATGCCGTGTCCTTGGCCCAGGGGGTAGTTCATTGGCAACCTCCCAANAAAGCGTTGGAAAAGGTGAAACGACTTGTATATGAGCCTTCAATTAGTCGTTATGGTAATGATGAAGGTATTCCCAGACTCAGAGCAGCGTTAGACAAAAAGTTGCNTGATGAAAATAATTTGCACAAATCTTCAGTAATGGTTACGGCAGTGACACAGTTCGCATTTCAGCTTCCATTCAACAATATTGTGATGCTTTTCTTACTTTGTTTTGATCCGGGGGATTCTGTGGTTGTATTTGCTCCTTACTACTTCAATGCCTTCATGTCCTTCCAGACGACTGGCATTACCAATATACTAGTCGGTCATTGTAATCCAGAAACACTTCATCCTGATGCAGATTGGTTGGAAAGAATATTGTCAGAAACTAAACCTACCCCAATGCTTGTTACTGTTGTAAATCCAGGCAACCCAACTGGAACTTACATTCCAGAGTCCCTTCTAAAGAGGATTTCAGATCTCTGTGAGAATACTGGCTCTTGGCTTGTTGTTGATAATACATATGAGTATTTTATGTATGATGGTCTAAAACACTCTTGTGTAGAGGGAAATCACATTGTTAATGTTTTCTCATTCTCAAAAGCACATGGAATGANGGGGTGGCGGGTTGGATATATAGCATACCCCACTGAAGTAGAAGGGTTTGCTGCCCAACTTCTAAAAGTTCAAGACAACATCCCCATCTGCGCTTCGATACTATCGCAGTATCTCGNGCTCTATTCATTGGAAATGGGTCCNCAATGGGTTCTAGACCGGGTACAAAGCCTTGTCAAGAACAGAGACATTGTCTTAGAAGCACTTTCCCCTCTTGGTGAGGGTTCTGTAAAAGGAGGAGAAGGTGCCATATACCTGTGGGCAAAACTCCCGGAAGGAAATGCTCATGACGATTTCGAAGTTGTNCGCTGGCTAGCTAAGAGGCACAGGGTCAGGGTAATCCCGGGAAGTGCGTGCGGCNGTGCCGGCAATCTAAGGATTTCATTTGGAGGCTTGACTGAGGATGACTGCAGAGAAGCTGCAAAAAGACTCAAGAAAGGCTTAGAAGAATTGTTTACAACAGTTAAGAGGCACTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00041	307957	314588	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0009058 biosynthetic process

molecular_function

GO:0003824 catalytic activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000041s00007117.1	PF00155.16	Aminotran_1_2	20	375	3.20E-44
Glyur000041s00007117.2	PF00155.16	Aminotran_1_2	20	181	7.60E-13
Glyur000041s00007117.2	PF00155.16	Aminotran_1_2	204	319	1.10E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.221
SRR1783600	control	2.236
SRR1783602	moderate drought stress	2.635
SRR1811619	moderate drought stress	2.551

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.511
DRR006520	Root Summer glycyrrhizin high producing strain	3.412
DRR006521	Root Winter glycyrrhizin high producing strain	1.449
DRR006522	Root Winter glycyrrhizin high producing strain	1.541
DRR006523	Root Summer glycyrrhizin low producing strain	3.213
DRR006524	Root Summer glycyrrhizin low producing strain	2.572
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.133
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.539

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.312
SRR2868004	Drought Stress (root)	3.640
SRR2967015	Control (root)	3.797

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.444
SRR9715740	Leaf	2.535
SRR9715741	Leaf	1.519
SRR9715739	Root	0.265
SRR9715742	Root	1.099
SRR9715743	Root	0.903

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.113
SRR8749028	MeJA induced 9h	10.062
SRR8749029	MeJA induced 9h	9.379
SRR8749030	Uninduced	6.055
SRR8749031	Uninduced	6.051
SRR8749032	Uninduced	6.174

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.815
SRR8400027	Control - Root	5.913